Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.34■□□□□ 0.85
SOX3P41225 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SOX3P41225 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.34■□□□□ 0.85
SOX3P41225 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SOX3P41225 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC20.34■□□□□ 0.85
SOX3P41225 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.34■□□□□ 0.85
SOX3P41225 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SOX3P41225 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
SOX3P41225 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SOX3P41225 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SOX3P41225 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SOX3P41225 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.33■□□□□ 0.85
SOX3P41225 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SOX3P41225 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.33■□□□□ 0.85
SOX3P41225 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
SOX3P41225 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SOX3P41225 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SOX3P41225 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SOX3P41225 AL024507.2-201ENST00000606070 2574 ntBASIC20.33■□□□□ 0.84
SOX3P41225 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX3P41225 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX3P41225 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.32■□□□□ 0.84
SOX3P41225 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.32■□□□□ 0.84
SOX3P41225 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.32■□□□□ 0.84
SOX3P41225 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SOX3P41225 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.32■□□□□ 0.84
SOX3P41225 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SOX3P41225 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX3P41225 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
SOX3P41225 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX3P41225 TSPY26P-201ENST00000476365 1326 ntBASIC20.31■□□□□ 0.84
SOX3P41225 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SOX3P41225 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SOX3P41225 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SOX3P41225 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.31■□□□□ 0.84
SOX3P41225 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.31■□□□□ 0.84
SOX3P41225 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SOX3P41225 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX3P41225 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.31■□□□□ 0.84
SOX3P41225 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX3P41225 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.31■□□□□ 0.84
SOX3P41225 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX3P41225 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SOX3P41225 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SOX3P41225 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.3■□□□□ 0.84
SOX3P41225 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SOX3P41225 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SOX3P41225 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX3P41225 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.3■□□□□ 0.84
SOX3P41225 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.3■□□□□ 0.84
SOX3P41225 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX3P41225 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SOX3P41225 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SOX3P41225 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SOX3P41225 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SOX3P41225 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
SOX3P41225 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SOX3P41225 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.29■□□□□ 0.84
SOX3P41225 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SOX3P41225 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX3P41225 IRS3P-201ENST00000223076 1006 ntBASIC20.29■□□□□ 0.84
SOX3P41225 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SOX3P41225 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SOX3P41225 IGHV3-19-201ENST00000521488 291 ntBASIC20.29■□□□□ 0.84
SOX3P41225 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.29■□□□□ 0.84
SOX3P41225 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SOX3P41225 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.29■□□□□ 0.84
SOX3P41225 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SOX3P41225 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX3P41225 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.29■□□□□ 0.84
SOX3P41225 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX3P41225 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.29■□□□□ 0.84
SOX3P41225 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.29■□□□□ 0.84
SOX3P41225 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
SOX3P41225 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SOX3P41225 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.29■□□□□ 0.84
SOX3P41225 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.28■□□□□ 0.84
SOX3P41225 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX3P41225 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SOX3P41225 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SOX3P41225 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.28■□□□□ 0.84
SOX3P41225 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.28■□□□□ 0.84
SOX3P41225 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.28■□□□□ 0.84
SOX3P41225 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SOX3P41225 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.28■□□□□ 0.84
SOX3P41225 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SOX3P41225 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX3P41225 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SOX3P41225 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
SOX3P41225 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SOX3P41225 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
SOX3P41225 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.27■□□□□ 0.84
SOX3P41225 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX3P41225 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX3P41225 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX3P41225 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.27■□□□□ 0.84
SOX3P41225 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX3P41225 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
SOX3P41225 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SOX3P41225 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms