Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.33■□□□□ 0.52
USF1P22415 AC137761.2-201ENST00000561729 223 ntBASIC18.33■□□□□ 0.52
USF1P22415 AC145350.3-201ENST00000569033 163 ntBASIC18.33■□□□□ 0.52
USF1P22415 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.33■□□□□ 0.52
USF1P22415 AC087239.1-201ENST00000622671 572 ntBASIC18.33■□□□□ 0.52
USF1P22415 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.33■□□□□ 0.52
USF1P22415 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF1P22415 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
USF1P22415 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
USF1P22415 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.32■□□□□ 0.52
USF1P22415 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
USF1P22415 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.32■□□□□ 0.52
USF1P22415 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
USF1P22415 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.32■□□□□ 0.52
USF1P22415 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.32■□□□□ 0.52
USF1P22415 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
USF1P22415 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.32■□□□□ 0.52
USF1P22415 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.32■□□□□ 0.52
USF1P22415 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.32■□□□□ 0.52
USF1P22415 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.32■□□□□ 0.52
USF1P22415 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
USF1P22415 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
USF1P22415 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.32■□□□□ 0.52
USF1P22415 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.31■□□□□ 0.52
USF1P22415 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.31■□□□□ 0.52
USF1P22415 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.31■□□□□ 0.52
USF1P22415 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.31■□□□□ 0.52
USF1P22415 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.31■□□□□ 0.52
USF1P22415 TPRG1LP1-201ENST00000598702 760 ntBASIC18.31■□□□□ 0.52
USF1P22415 AC080038.1-201ENST00000611274 1154 ntBASIC18.31■□□□□ 0.52
USF1P22415 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.31■□□□□ 0.52
USF1P22415 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.31■□□□□ 0.52
USF1P22415 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.31■□□□□ 0.52
USF1P22415 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
USF1P22415 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
USF1P22415 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.31■□□□□ 0.52
USF1P22415 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USF1P22415 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.3■□□□□ 0.52
USF1P22415 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
USF1P22415 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
USF1P22415 BX005040.4-201ENST00000637145 1518 ntBASIC18.3■□□□□ 0.52
USF1P22415 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USF1P22415 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USF1P22415 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
USF1P22415 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USF1P22415 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.3■□□□□ 0.52
USF1P22415 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USF1P22415 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.3■□□□□ 0.52
USF1P22415 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USF1P22415 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
USF1P22415 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
USF1P22415 AC004687.1-201ENST00000579003 1625 ntBASIC18.3■□□□□ 0.52
USF1P22415 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC18.3■□□□□ 0.52
USF1P22415 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USF1P22415 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
USF1P22415 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
USF1P22415 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USF1P22415 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
USF1P22415 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.29■□□□□ 0.52
USF1P22415 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USF1P22415 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USF1P22415 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.29■□□□□ 0.52
USF1P22415 AC006015.1-201ENST00000429970 570 ntBASIC18.29■□□□□ 0.52
USF1P22415 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.29■□□□□ 0.52
USF1P22415 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USF1P22415 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.29■□□□□ 0.52
USF1P22415 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
USF1P22415 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USF1P22415 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.29■□□□□ 0.52
USF1P22415 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
USF1P22415 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USF1P22415 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USF1P22415 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USF1P22415 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USF1P22415 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC18.28■□□□□ 0.52
USF1P22415 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.28■□□□□ 0.52
USF1P22415 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.28■□□□□ 0.52
USF1P22415 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USF1P22415 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USF1P22415 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms