Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.58■■□□□ 1.05
XRCC1P18887 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.58■■□□□ 1.05
XRCC1P18887 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
XRCC1P18887 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
XRCC1P18887 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
XRCC1P18887 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
XRCC1P18887 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
XRCC1P18887 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
XRCC1P18887 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.57■■□□□ 1.04
XRCC1P18887 IRS3P-201ENST00000223076 1006 ntBASIC21.57■■□□□ 1.04
XRCC1P18887 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
XRCC1P18887 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.57■■□□□ 1.04
XRCC1P18887 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
XRCC1P18887 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
XRCC1P18887 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
XRCC1P18887 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
XRCC1P18887 AC242852.2-201ENST00000615738 1807 ntBASIC21.57■■□□□ 1.04
XRCC1P18887 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
XRCC1P18887 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
XRCC1P18887 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
XRCC1P18887 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
XRCC1P18887 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
XRCC1P18887 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
XRCC1P18887 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC21.56■■□□□ 1.04
XRCC1P18887 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.56■■□□□ 1.04
XRCC1P18887 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.56■■□□□ 1.04
XRCC1P18887 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.56■■□□□ 1.04
XRCC1P18887 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
XRCC1P18887 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
XRCC1P18887 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
XRCC1P18887 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
XRCC1P18887 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
XRCC1P18887 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.55■■□□□ 1.04
XRCC1P18887 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
XRCC1P18887 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
XRCC1P18887 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
XRCC1P18887 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
XRCC1P18887 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
XRCC1P18887 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.55■■□□□ 1.04
XRCC1P18887 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.55■■□□□ 1.04
XRCC1P18887 AC010525.1-201ENST00000585559 441 ntBASIC21.55■■□□□ 1.04
XRCC1P18887 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
XRCC1P18887 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.55■■□□□ 1.04
XRCC1P18887 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.55■■□□□ 1.04
XRCC1P18887 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
XRCC1P18887 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
XRCC1P18887 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
XRCC1P18887 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.55■■□□□ 1.04
XRCC1P18887 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
XRCC1P18887 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
XRCC1P18887 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.54■■□□□ 1.04
XRCC1P18887 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.54■■□□□ 1.04
XRCC1P18887 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
XRCC1P18887 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
XRCC1P18887 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
XRCC1P18887 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.54■■□□□ 1.04
XRCC1P18887 RHOF-204ENST00000537265 699 ntTSL 2 BASIC21.54■■□□□ 1.04
XRCC1P18887 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
XRCC1P18887 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.54■■□□□ 1.04
XRCC1P18887 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
XRCC1P18887 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.54■■□□□ 1.04
XRCC1P18887 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
XRCC1P18887 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
XRCC1P18887 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
XRCC1P18887 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.54■■□□□ 1.04
XRCC1P18887 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
XRCC1P18887 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.53■■□□□ 1.04
XRCC1P18887 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.53■■□□□ 1.04
XRCC1P18887 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.53■■□□□ 1.04
XRCC1P18887 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.53■■□□□ 1.04
XRCC1P18887 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
XRCC1P18887 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
XRCC1P18887 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
XRCC1P18887 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.53■■□□□ 1.04
XRCC1P18887 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
XRCC1P18887 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
XRCC1P18887 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.53■■□□□ 1.04
XRCC1P18887 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
XRCC1P18887 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
XRCC1P18887 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.53■■□□□ 1.04
XRCC1P18887 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
XRCC1P18887 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
XRCC1P18887 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
XRCC1P18887 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
XRCC1P18887 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
XRCC1P18887 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
XRCC1P18887 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
XRCC1P18887 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
XRCC1P18887 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
XRCC1P18887 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.52■■□□□ 1.04
XRCC1P18887 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.52■■□□□ 1.04
XRCC1P18887 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
XRCC1P18887 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.52■■□□□ 1.04
XRCC1P18887 IGHV3-19-201ENST00000521488 291 ntBASIC21.52■■□□□ 1.04
XRCC1P18887 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
XRCC1P18887 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.52■■□□□ 1.04
XRCC1P18887 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
XRCC1P18887 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.52■■□□□ 1.03
XRCC1P18887 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.52■■□□□ 1.03
XRCC1P18887 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms