Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC16.8■□□□□ 0.28
CXCL1P09341 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.8■□□□□ 0.28
CXCL1P09341 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CXCL1P09341 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC16.79■□□□□ 0.28
CXCL1P09341 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CXCL1P09341 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 FEM1AP4-201ENST00000443167 1987 ntBASIC16.79■□□□□ 0.28
CXCL1P09341 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CXCL1P09341 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC16.79■□□□□ 0.28
CXCL1P09341 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CXCL1P09341 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CXCL1P09341 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.79■□□□□ 0.28
CXCL1P09341 AC087742.1-201ENST00000575880 1738 ntBASIC16.79■□□□□ 0.28
CXCL1P09341 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CXCL1P09341 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CXCL1P09341 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC16.78■□□□□ 0.28
CXCL1P09341 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC16.78■□□□□ 0.28
CXCL1P09341 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL1P09341 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL1P09341 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC16.78■□□□□ 0.28
CXCL1P09341 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL1P09341 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL1P09341 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL1P09341 HES4-204ENST00000484667 667 ntTSL 3 BASIC16.78■□□□□ 0.28
CXCL1P09341 AC022413.1-201ENST00000624602 984 ntBASIC16.78■□□□□ 0.28
CXCL1P09341 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CXCL1P09341 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CXCL1P09341 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL1P09341 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL1P09341 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CXCL1P09341 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC16.78■□□□□ 0.28
CXCL1P09341 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
CXCL1P09341 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CXCL1P09341 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC16.77■□□□□ 0.28
CXCL1P09341 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CXCL1P09341 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CXCL1P09341 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.77■□□□□ 0.28
CXCL1P09341 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC16.77■□□□□ 0.28
CXCL1P09341 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CXCL1P09341 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.77■□□□□ 0.28
CXCL1P09341 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CXCL1P09341 HES4-202ENST00000428771 1040 ntTSL 2 BASIC16.77■□□□□ 0.28
CXCL1P09341 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC16.77■□□□□ 0.28
CXCL1P09341 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CXCL1P09341 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CXCL1P09341 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
CXCL1P09341 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CXCL1P09341 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CXCL1P09341 AFG3L1P-217ENST00000557444 2447 ntBASIC16.77■□□□□ 0.27
CXCL1P09341 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CXCL1P09341 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CXCL1P09341 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CXCL1P09341 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.76■□□□□ 0.27
CXCL1P09341 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CXCL1P09341 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CXCL1P09341 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC16.76■□□□□ 0.27
CXCL1P09341 SRP68-213ENST00000629930 165 ntTSL 5 BASIC16.76■□□□□ 0.27
CXCL1P09341 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CXCL1P09341 FEM1AP1-201ENST00000431297 1995 ntBASIC16.76■□□□□ 0.27
CXCL1P09341 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC16.76■□□□□ 0.27
CXCL1P09341 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.76■□□□□ 0.27
CXCL1P09341 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CXCL1P09341 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CXCL1P09341 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CXCL1P09341 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CXCL1P09341 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.75■□□□□ 0.27
CXCL1P09341 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
CXCL1P09341 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC16.75■□□□□ 0.27
CXCL1P09341 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 Z98882.1-201ENST00000622160 2253 ntBASIC16.75■□□□□ 0.27
CXCL1P09341 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CXCL1P09341 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL1P09341 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL1P09341 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL1P09341 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL1P09341 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL1P09341 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL1P09341 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
CXCL1P09341 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL1P09341 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CXCL1P09341 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL1P09341 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL1P09341 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL1P09341 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CXCL1P09341 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC16.74■□□□□ 0.27
CXCL1P09341 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms