Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LDLRP01130 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LDLRP01130 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.83■□□□□ 0.93
LDLRP01130 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDLRP01130 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.83■□□□□ 0.93
LDLRP01130 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDLRP01130 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDLRP01130 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
LDLRP01130 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
LDLRP01130 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDLRP01130 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
LDLRP01130 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDLRP01130 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LDLRP01130 SNX5-217ENST00000606557 1087 ntBASIC20.83■□□□□ 0.93
LDLRP01130 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LDLRP01130 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LDLRP01130 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LDLRP01130 AC131274.2-201ENST00000580697 1507 ntBASIC20.83■□□□□ 0.92
LDLRP01130 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
LDLRP01130 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
LDLRP01130 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LDLRP01130 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDLRP01130 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.82■□□□□ 0.92
LDLRP01130 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDLRP01130 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.82■□□□□ 0.92
LDLRP01130 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDLRP01130 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LDLRP01130 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LDLRP01130 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LDLRP01130 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.82■□□□□ 0.92
LDLRP01130 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
LDLRP01130 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LDLRP01130 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.82■□□□□ 0.92
LDLRP01130 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
LDLRP01130 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 AP001330.3-201ENST00000520123 633 ntBASIC20.81■□□□□ 0.92
LDLRP01130 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.81■□□□□ 0.92
LDLRP01130 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LDLRP01130 AC080038.3-201ENST00000623346 1952 ntBASIC20.81■□□□□ 0.92
LDLRP01130 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDLRP01130 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDLRP01130 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDLRP01130 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDLRP01130 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LDLRP01130 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.8■□□□□ 0.92
LDLRP01130 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.8■□□□□ 0.92
LDLRP01130 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.8■□□□□ 0.92
LDLRP01130 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDLRP01130 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LDLRP01130 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.8■□□□□ 0.92
LDLRP01130 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDLRP01130 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
LDLRP01130 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
LDLRP01130 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.79■□□□□ 0.92
LDLRP01130 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.79■□□□□ 0.92
LDLRP01130 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDLRP01130 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDLRP01130 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDLRP01130 AC091305.1-201ENST00000479476 895 ntBASIC20.79■□□□□ 0.92
LDLRP01130 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.79■□□□□ 0.92
LDLRP01130 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
LDLRP01130 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LDLRP01130 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDLRP01130 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LDLRP01130 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LDLRP01130 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LDLRP01130 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.78■□□□□ 0.92
LDLRP01130 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDLRP01130 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
LDLRP01130 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LDLRP01130 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDLRP01130 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
LDLRP01130 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LDLRP01130 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
LDLRP01130 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
LDLRP01130 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
LDLRP01130 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDLRP01130 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.76■□□□□ 0.91
LDLRP01130 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.76■□□□□ 0.91
LDLRP01130 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LDLRP01130 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.76■□□□□ 0.91
LDLRP01130 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDLRP01130 SLC25A24-204ENST00000569674 2357 ntBASIC20.76■□□□□ 0.91
LDLRP01130 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LDLRP01130 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
LDLRP01130 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms