Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX3O95343 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SIX3O95343 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SIX3O95343 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX3O95343 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
SIX3O95343 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX3O95343 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SIX3O95343 AL356441.2-201ENST00000443009 864 ntBASIC21.18■□□□□ 0.98
SIX3O95343 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
SIX3O95343 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.18■□□□□ 0.98
SIX3O95343 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.18■□□□□ 0.98
SIX3O95343 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX3O95343 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX3O95343 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.18■□□□□ 0.98
SIX3O95343 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC21.18■□□□□ 0.98
SIX3O95343 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.18■□□□□ 0.98
SIX3O95343 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SIX3O95343 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX3O95343 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
SIX3O95343 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SIX3O95343 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SIX3O95343 AC026310.3-201ENST00000625186 2373 ntBASIC21.17■□□□□ 0.98
SIX3O95343 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SIX3O95343 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.17■□□□□ 0.98
SIX3O95343 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SIX3O95343 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.17■□□□□ 0.98
SIX3O95343 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 SRD5A1P1-201ENST00000442297 786 ntBASIC21.17■□□□□ 0.98
SIX3O95343 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.17■□□□□ 0.98
SIX3O95343 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SIX3O95343 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.17■□□□□ 0.98
SIX3O95343 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
SIX3O95343 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
SIX3O95343 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SIX3O95343 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SIX3O95343 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SIX3O95343 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SIX3O95343 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX3O95343 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX3O95343 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SIX3O95343 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX3O95343 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.16■□□□□ 0.98
SIX3O95343 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX3O95343 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.15■□□□□ 0.98
SIX3O95343 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SIX3O95343 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX3O95343 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
SIX3O95343 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX3O95343 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC21.15■□□□□ 0.98
SIX3O95343 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SIX3O95343 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.15■□□□□ 0.98
SIX3O95343 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.15■□□□□ 0.98
SIX3O95343 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SIX3O95343 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SIX3O95343 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SIX3O95343 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.15■□□□□ 0.98
SIX3O95343 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX3O95343 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX3O95343 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX3O95343 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
SIX3O95343 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
SIX3O95343 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.14■□□□□ 0.97
SIX3O95343 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
SIX3O95343 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.14■□□□□ 0.97
SIX3O95343 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SIX3O95343 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX3O95343 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SIX3O95343 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SIX3O95343 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX3O95343 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SIX3O95343 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX3O95343 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SIX3O95343 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX3O95343 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SIX3O95343 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms