Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC34.16■■■■□ 3.06
PCF11O94913 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC34.16■■■■□ 3.06
PCF11O94913 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC34.16■■■■□ 3.06
PCF11O94913 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC34.16■■■■□ 3.06
PCF11O94913 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC34.15■■■■□ 3.06
PCF11O94913 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC34.15■■■■□ 3.06
PCF11O94913 CROCCP5-201ENST00000436658 830 ntBASIC34.15■■■■□ 3.06
PCF11O94913 UBE2DNL-204ENST00000602536 740 ntBASIC34.15■■■■□ 3.06
PCF11O94913 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC34.15■■■■□ 3.06
PCF11O94913 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC34.15■■■■□ 3.06
PCF11O94913 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
PCF11O94913 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC34.15■■■■□ 3.06
PCF11O94913 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
PCF11O94913 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
PCF11O94913 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
PCF11O94913 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
PCF11O94913 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
PCF11O94913 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
PCF11O94913 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC34.14■■■■□ 3.06
PCF11O94913 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC34.14■■■■□ 3.06
PCF11O94913 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC34.13■■■■□ 3.05
PCF11O94913 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC34.13■■■■□ 3.05
PCF11O94913 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC34.13■■■■□ 3.05
PCF11O94913 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC34.13■■■■□ 3.05
PCF11O94913 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
PCF11O94913 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
PCF11O94913 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC34.13■■■■□ 3.05
PCF11O94913 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC34.13■■■■□ 3.05
PCF11O94913 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC34.12■■■■□ 3.05
PCF11O94913 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC34.12■■■■□ 3.05
PCF11O94913 AL355802.2-201ENST00000402069 882 ntBASIC34.12■■■■□ 3.05
PCF11O94913 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC34.12■■■■□ 3.05
PCF11O94913 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC34.12■■■■□ 3.05
PCF11O94913 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC34.12■■■■□ 3.05
PCF11O94913 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC34.12■■■■□ 3.05
PCF11O94913 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC34.12■■■■□ 3.05
PCF11O94913 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC34.11■■■■□ 3.05
PCF11O94913 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
PCF11O94913 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
PCF11O94913 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC34.11■■■■□ 3.05
PCF11O94913 AC055733.4-201ENST00000638462 1354 ntBASIC34.11■■■■□ 3.05
PCF11O94913 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
PCF11O94913 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC34.11■■■■□ 3.05
PCF11O94913 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
PCF11O94913 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
PCF11O94913 MFF-207ENST00000409565 1548 ntTSL 2 BASIC34.1■■■■□ 3.05
PCF11O94913 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC34.1■■■■□ 3.05
PCF11O94913 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
PCF11O94913 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC34.1■■■■□ 3.05
PCF11O94913 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
PCF11O94913 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC34.1■■■■□ 3.05
PCF11O94913 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
PCF11O94913 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
PCF11O94913 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
PCF11O94913 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC34.09■■■■□ 3.05
PCF11O94913 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC34.09■■■■□ 3.05
PCF11O94913 AC026185.1-201ENST00000445748 174 ntBASIC34.09■■■■□ 3.05
PCF11O94913 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC34.09■■■■□ 3.05
PCF11O94913 AL050303.2-201ENST00000619798 666 ntBASIC34.09■■■■□ 3.05
PCF11O94913 AC009237.3-201ENST00000393279 1427 ntBASIC34.09■■■■□ 3.05
PCF11O94913 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC34.08■■■■□ 3.05
PCF11O94913 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
PCF11O94913 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC34.08■■■■□ 3.05
PCF11O94913 TESC-206ENST00000541210 936 ntTSL 3 BASIC34.08■■■■□ 3.05
PCF11O94913 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.05
PCF11O94913 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC34.08■■■■□ 3.05
PCF11O94913 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
PCF11O94913 AC093323.1-202ENST00000635031 2045 ntBASIC34.07■■■■□ 3.05
PCF11O94913 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.05
PCF11O94913 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC34.07■■■■□ 3.05
PCF11O94913 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC34.07■■■■□ 3.05
PCF11O94913 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC34.07■■■■□ 3.05
PCF11O94913 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC34.07■■■■□ 3.05
PCF11O94913 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC34.07■■■■□ 3.04
PCF11O94913 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC34.07■■■■□ 3.04
PCF11O94913 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC34.07■■■■□ 3.04
PCF11O94913 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
PCF11O94913 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC34.06■■■■□ 3.04
PCF11O94913 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC34.06■■■■□ 3.04
PCF11O94913 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC34.06■■■■□ 3.04
PCF11O94913 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC34.06■■■■□ 3.04
PCF11O94913 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
PCF11O94913 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC34.06■■■■□ 3.04
PCF11O94913 UQCRFS1P1-201ENST00000435169 820 ntBASIC34.06■■■■□ 3.04
PCF11O94913 SPI1-203ENST00000533030 661 ntTSL 2 BASIC34.06■■■■□ 3.04
PCF11O94913 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
PCF11O94913 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
PCF11O94913 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC34.05■■■■□ 3.04
PCF11O94913 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
PCF11O94913 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC34.05■■■■□ 3.04
PCF11O94913 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC34.05■■■■□ 3.04
PCF11O94913 AC079089.2-201ENST00000531211 1277 ntBASIC34.05■■■■□ 3.04
PCF11O94913 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
PCF11O94913 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
PCF11O94913 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC34.05■■■■□ 3.04
PCF11O94913 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC34.05■■■■□ 3.04
PCF11O94913 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC34.04■■■■□ 3.04
PCF11O94913 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC34.04■■■■□ 3.04
PCF11O94913 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC34.04■■■■□ 3.04
PCF11O94913 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms