Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.56■□□□□ 0.56
XRCC3O43542 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC18.56■□□□□ 0.56
XRCC3O43542 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 DUX4L4-201ENST00000566884 1269 ntBASIC18.56■□□□□ 0.56
XRCC3O43542 SNX5-217ENST00000606557 1087 ntBASIC18.56■□□□□ 0.56
XRCC3O43542 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.56■□□□□ 0.56
XRCC3O43542 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.56■□□□□ 0.56
XRCC3O43542 AL157384.1-201ENST00000445995 2473 ntBASIC18.56■□□□□ 0.56
XRCC3O43542 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.56■□□□□ 0.56
XRCC3O43542 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC3O43542 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC3O43542 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.55■□□□□ 0.56
XRCC3O43542 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC3O43542 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC3O43542 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.55■□□□□ 0.56
XRCC3O43542 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
XRCC3O43542 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC3O43542 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.55■□□□□ 0.56
XRCC3O43542 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
XRCC3O43542 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
XRCC3O43542 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
XRCC3O43542 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
XRCC3O43542 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 KRT18P60-201ENST00000312876 1297 ntBASIC18.54■□□□□ 0.56
XRCC3O43542 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
XRCC3O43542 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.54■□□□□ 0.56
XRCC3O43542 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC18.54■□□□□ 0.56
XRCC3O43542 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.54■□□□□ 0.56
XRCC3O43542 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.54■□□□□ 0.56
XRCC3O43542 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC18.54■□□□□ 0.56
XRCC3O43542 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.54■□□□□ 0.56
XRCC3O43542 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
XRCC3O43542 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
XRCC3O43542 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
XRCC3O43542 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
XRCC3O43542 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
XRCC3O43542 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.53■□□□□ 0.56
XRCC3O43542 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
XRCC3O43542 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC18.53■□□□□ 0.56
XRCC3O43542 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.53■□□□□ 0.56
XRCC3O43542 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
XRCC3O43542 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
XRCC3O43542 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
XRCC3O43542 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
XRCC3O43542 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
XRCC3O43542 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
XRCC3O43542 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
XRCC3O43542 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
XRCC3O43542 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
XRCC3O43542 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
XRCC3O43542 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
XRCC3O43542 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
XRCC3O43542 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
XRCC3O43542 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
XRCC3O43542 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
XRCC3O43542 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
XRCC3O43542 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
XRCC3O43542 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
XRCC3O43542 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
XRCC3O43542 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
XRCC3O43542 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.51■□□□□ 0.55
XRCC3O43542 AC092667.1-201ENST00000434301 2586 ntBASIC18.51■□□□□ 0.55
XRCC3O43542 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
XRCC3O43542 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC18.51■□□□□ 0.55
XRCC3O43542 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
XRCC3O43542 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
XRCC3O43542 AC004687.1-201ENST00000579003 1625 ntBASIC18.5■□□□□ 0.55
XRCC3O43542 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
XRCC3O43542 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC3O43542 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms