Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.87■□□□□ 0.93
CACNA1AO00555 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CACNA1AO00555 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CACNA1AO00555 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CACNA1AO00555 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CACNA1AO00555 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.87■□□□□ 0.93
CACNA1AO00555 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.87■□□□□ 0.93
CACNA1AO00555 AC008694.1-202ENST00000636953 945 ntBASIC20.87■□□□□ 0.93
CACNA1AO00555 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CACNA1AO00555 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CACNA1AO00555 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
CACNA1AO00555 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1AO00555 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1AO00555 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.86■□□□□ 0.93
CACNA1AO00555 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.86■□□□□ 0.93
CACNA1AO00555 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.86■□□□□ 0.93
CACNA1AO00555 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.86■□□□□ 0.93
CACNA1AO00555 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
CACNA1AO00555 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.86■□□□□ 0.93
CACNA1AO00555 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.86■□□□□ 0.93
CACNA1AO00555 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.86■□□□□ 0.93
CACNA1AO00555 CYP2T3P-201ENST00000601990 817 ntBASIC20.86■□□□□ 0.93
CACNA1AO00555 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.86■□□□□ 0.93
CACNA1AO00555 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1AO00555 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CACNA1AO00555 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.85■□□□□ 0.93
CACNA1AO00555 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1AO00555 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.85■□□□□ 0.93
CACNA1AO00555 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1AO00555 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CACNA1AO00555 AC008403.3-201ENST00000598924 454 ntBASIC20.85■□□□□ 0.93
CACNA1AO00555 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.85■□□□□ 0.93
CACNA1AO00555 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
CACNA1AO00555 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1AO00555 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.84■□□□□ 0.93
CACNA1AO00555 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.84■□□□□ 0.93
CACNA1AO00555 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.84■□□□□ 0.93
CACNA1AO00555 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.84■□□□□ 0.93
CACNA1AO00555 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1AO00555 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1AO00555 AC055733.4-201ENST00000638462 1354 ntBASIC20.84■□□□□ 0.93
CACNA1AO00555 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1AO00555 AC087499.1-201ENST00000418141 1075 ntBASIC20.84■□□□□ 0.93
CACNA1AO00555 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
CACNA1AO00555 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1AO00555 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1AO00555 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.84■□□□□ 0.93
CACNA1AO00555 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1AO00555 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.84■□□□□ 0.93
CACNA1AO00555 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.84■□□□□ 0.93
CACNA1AO00555 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CACNA1AO00555 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.83■□□□□ 0.93
CACNA1AO00555 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CACNA1AO00555 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.83■□□□□ 0.93
CACNA1AO00555 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CACNA1AO00555 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CACNA1AO00555 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.83■□□□□ 0.92
CACNA1AO00555 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CACNA1AO00555 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CACNA1AO00555 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.82■□□□□ 0.92
CACNA1AO00555 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1AO00555 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1AO00555 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1AO00555 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1AO00555 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CACNA1AO00555 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CACNA1AO00555 REXO2-216ENST00000544196 452 ntTSL 3 BASIC20.82■□□□□ 0.92
CACNA1AO00555 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.82■□□□□ 0.92
CACNA1AO00555 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
CACNA1AO00555 GPALPP1-207ENST00000611650 899 ntBASIC20.82■□□□□ 0.92
CACNA1AO00555 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.82■□□□□ 0.92
CACNA1AO00555 AC005224.4-201ENST00000583262 1652 ntBASIC20.82■□□□□ 0.92
CACNA1AO00555 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CACNA1AO00555 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1AO00555 AC010141.2-201ENST00000452426 721 ntBASIC20.81■□□□□ 0.92
CACNA1AO00555 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC20.81■□□□□ 0.92
CACNA1AO00555 FAM197Y4-202ENST00000622692 608 ntBASIC20.81■□□□□ 0.92
CACNA1AO00555 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.81■□□□□ 0.92
CACNA1AO00555 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1AO00555 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1AO00555 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1AO00555 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
CACNA1AO00555 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
CACNA1AO00555 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CACNA1AO00555 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.81■□□□□ 0.92
CACNA1AO00555 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CACNA1AO00555 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CACNA1AO00555 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1AO00555 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.8■□□□□ 0.92
CACNA1AO00555 C1QBPP2-201ENST00000528754 825 ntBASIC20.8■□□□□ 0.92
CACNA1AO00555 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1AO00555 ABCB10P1-201ENST00000614297 2181 ntBASIC20.8■□□□□ 0.92
CACNA1AO00555 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1AO00555 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CACNA1AO00555 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1AO00555 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CACNA1AO00555 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.8■□□□□ 0.92
CACNA1AO00555 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.8■□□□□ 0.92
CACNA1AO00555 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.8■□□□□ 0.92
CACNA1AO00555 AC092865.7-201ENST00000641832 219 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms