Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HMGN4O00479 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HMGN4O00479 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
HMGN4O00479 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.21■□□□□ 0.83
HMGN4O00479 AC079089.2-201ENST00000531211 1277 ntBASIC20.21■□□□□ 0.83
HMGN4O00479 MIR4466-201ENST00000606121 54 ntBASIC20.21■□□□□ 0.83
HMGN4O00479 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
HMGN4O00479 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HMGN4O00479 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
HMGN4O00479 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.2■□□□□ 0.82
HMGN4O00479 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGN4O00479 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.2■□□□□ 0.82
HMGN4O00479 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGN4O00479 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HMGN4O00479 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.2■□□□□ 0.82
HMGN4O00479 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.2■□□□□ 0.82
HMGN4O00479 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
HMGN4O00479 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGN4O00479 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
HMGN4O00479 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGN4O00479 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGN4O00479 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGN4O00479 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGN4O00479 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGN4O00479 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.19■□□□□ 0.82
HMGN4O00479 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
HMGN4O00479 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HMGN4O00479 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.19■□□□□ 0.82
HMGN4O00479 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HMGN4O00479 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
HMGN4O00479 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
HMGN4O00479 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGN4O00479 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGN4O00479 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGN4O00479 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.18■□□□□ 0.82
HMGN4O00479 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.18■□□□□ 0.82
HMGN4O00479 AC068587.7-201ENST00000641602 218 ntBASIC20.18■□□□□ 0.82
HMGN4O00479 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGN4O00479 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGN4O00479 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.18■□□□□ 0.82
HMGN4O00479 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
HMGN4O00479 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HMGN4O00479 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HMGN4O00479 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGN4O00479 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGN4O00479 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGN4O00479 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGN4O00479 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGN4O00479 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
HMGN4O00479 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGN4O00479 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGN4O00479 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.17■□□□□ 0.82
HMGN4O00479 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGN4O00479 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HMGN4O00479 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGN4O00479 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
HMGN4O00479 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.17■□□□□ 0.82
HMGN4O00479 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HMGN4O00479 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGN4O00479 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGN4O00479 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGN4O00479 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
HMGN4O00479 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGN4O00479 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
HMGN4O00479 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
HMGN4O00479 SERBP1P1-201ENST00000396021 1160 ntBASIC20.16■□□□□ 0.82
HMGN4O00479 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGN4O00479 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
HMGN4O00479 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.16■□□□□ 0.82
HMGN4O00479 AC010525.1-201ENST00000585559 441 ntBASIC20.16■□□□□ 0.82
HMGN4O00479 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGN4O00479 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.16■□□□□ 0.82
HMGN4O00479 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.16■□□□□ 0.82
HMGN4O00479 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
HMGN4O00479 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.15■□□□□ 0.82
HMGN4O00479 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.15■□□□□ 0.82
HMGN4O00479 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.15■□□□□ 0.82
HMGN4O00479 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGN4O00479 AC131281.2-201ENST00000520478 145 ntBASIC20.15■□□□□ 0.82
HMGN4O00479 AL138724.1-201ENST00000606771 1088 ntBASIC20.15■□□□□ 0.82
HMGN4O00479 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.15■□□□□ 0.82
HMGN4O00479 SYT6-210ENST00000641643 1587 ntBASIC20.15■□□□□ 0.82
HMGN4O00479 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
HMGN4O00479 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGN4O00479 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGN4O00479 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGN4O00479 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGN4O00479 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.15■□□□□ 0.82
HMGN4O00479 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.15■□□□□ 0.82
HMGN4O00479 AL137060.1-201ENST00000618151 2648 ntBASIC20.15■□□□□ 0.82
HMGN4O00479 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
HMGN4O00479 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms