Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
CBX4O00257 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
CBX4O00257 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
CBX4O00257 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CBX4O00257 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
CBX4O00257 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CBX4O00257 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
CBX4O00257 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CBX4O00257 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC22.15■■□□□ 1.14
CBX4O00257 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CBX4O00257 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
CBX4O00257 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
CBX4O00257 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
CBX4O00257 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.14■■□□□ 1.14
CBX4O00257 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
CBX4O00257 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
CBX4O00257 NT5C3AP1-201ENST00000394500 1012 ntBASIC22.14■■□□□ 1.13
CBX4O00257 AC027612.3-201ENST00000413684 1047 ntBASIC22.14■■□□□ 1.13
CBX4O00257 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CBX4O00257 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC22.14■■□□□ 1.13
CBX4O00257 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CBX4O00257 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CBX4O00257 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC22.14■■□□□ 1.13
CBX4O00257 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
CBX4O00257 AC137767.1-201ENST00000602918 1920 ntBASIC22.14■■□□□ 1.13
CBX4O00257 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CBX4O00257 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.13
CBX4O00257 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CBX4O00257 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CBX4O00257 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CBX4O00257 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
CBX4O00257 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
CBX4O00257 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
CBX4O00257 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC22.13■■□□□ 1.13
CBX4O00257 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.13■■□□□ 1.13
CBX4O00257 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC22.13■■□□□ 1.13
CBX4O00257 GALC-202ENST00000393568 2054 ntTSL 2 BASIC22.13■■□□□ 1.13
CBX4O00257 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CBX4O00257 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CBX4O00257 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
CBX4O00257 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.12■■□□□ 1.13
CBX4O00257 YBX1P1-201ENST00000445822 960 ntBASIC22.12■■□□□ 1.13
CBX4O00257 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC22.12■■□□□ 1.13
CBX4O00257 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.12■■□□□ 1.13
CBX4O00257 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CBX4O00257 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CBX4O00257 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CBX4O00257 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CBX4O00257 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
CBX4O00257 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CBX4O00257 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CBX4O00257 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CBX4O00257 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CBX4O00257 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CBX4O00257 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.11■■□□□ 1.13
CBX4O00257 IKBKGP1-201ENST00000612193 1073 ntBASIC22.11■■□□□ 1.13
CBX4O00257 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.11■■□□□ 1.13
CBX4O00257 ESRRAP2-201ENST00000418437 1549 ntBASIC22.11■■□□□ 1.13
CBX4O00257 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CBX4O00257 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CBX4O00257 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CBX4O00257 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CBX4O00257 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CBX4O00257 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CBX4O00257 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CBX4O00257 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC22.1■■□□□ 1.13
CBX4O00257 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC22.1■■□□□ 1.13
CBX4O00257 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC22.1■■□□□ 1.13
CBX4O00257 BX005040.4-201ENST00000637145 1518 ntBASIC22.1■■□□□ 1.13
CBX4O00257 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CBX4O00257 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.1■■□□□ 1.13
CBX4O00257 AC068473.5-201ENST00000616428 2072 ntBASIC22.1■■□□□ 1.13
CBX4O00257 ASL-203ENST00000380839 1765 ntTSL 5 BASIC22.1■■□□□ 1.13
CBX4O00257 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.09■■□□□ 1.13
CBX4O00257 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 LINC00526-201ENST00000581067 1875 ntBASIC22.09■■□□□ 1.13
CBX4O00257 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.09■■□□□ 1.13
CBX4O00257 OR7E47P-201ENST00000546390 1422 ntBASIC22.09■■□□□ 1.13
CBX4O00257 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 HACD1-201ENST00000326961 773 ntTSL 2 BASIC22.09■■□□□ 1.13
CBX4O00257 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC22.09■■□□□ 1.13
CBX4O00257 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CBX4O00257 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.09■■□□□ 1.13
CBX4O00257 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC22.09■■□□□ 1.13
CBX4O00257 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CBX4O00257 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CBX4O00257 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CBX4O00257 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CBX4O00257 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CBX4O00257 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CBX4O00257 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms