Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SMKR1H3BMG3 Z98882.1-201ENST00000622160 2253 ntBASIC15.81■□□□□ 0.12
SMKR1H3BMG3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC15.81■□□□□ 0.12
SMKR1H3BMG3 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SMKR1H3BMG3 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SMKR1H3BMG3 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 RNF165-205ENST00000588679 2904 ntBASIC15.8■□□□□ 0.12
SMKR1H3BMG3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SMKR1H3BMG3 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC15.79■□□□□ 0.12
SMKR1H3BMG3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 FEM1AP4-201ENST00000443167 1987 ntBASIC15.78■□□□□ 0.12
SMKR1H3BMG3 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 LINC01521-201ENST00000504184 1943 ntBASIC15.78■□□□□ 0.12
SMKR1H3BMG3 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SMKR1H3BMG3 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC15.77■□□□□ 0.12
SMKR1H3BMG3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.77■□□□□ 0.11
SMKR1H3BMG3 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 AC004448.1-201ENST00000458332 883 ntBASIC15.76■□□□□ 0.11
SMKR1H3BMG3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMKR1H3BMG3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SMKR1H3BMG3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SMKR1H3BMG3 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms