Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 YBX1P1-201ENST00000445822 960 ntBASIC24.53■■□□□ 1.52
KDM3AQ9Y4C1 AL358852.1-201ENST00000623174 1268 ntBASIC24.53■■□□□ 1.52
KDM3AQ9Y4C1 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
KDM3AQ9Y4C1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
KDM3AQ9Y4C1 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
KDM3AQ9Y4C1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
KDM3AQ9Y4C1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 AC027612.3-201ENST00000413684 1047 ntBASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
KDM3AQ9Y4C1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 GUSBP5-202ENST00000510805 1989 ntBASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 AC087239.1-201ENST00000622671 572 ntBASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
KDM3AQ9Y4C1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 AC034268.1-201ENST00000441047 882 ntBASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
KDM3AQ9Y4C1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 NME4-202ENST00000382940 766 ntTSL 3 BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 NME4-211ENST00000620944 1193 ntTSL 2 BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC24.48■■□□□ 1.51
KDM3AQ9Y4C1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 AP005435.1-201ENST00000529293 1178 ntBASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 AL117328.2-201ENST00000624617 1940 ntBASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
KDM3AQ9Y4C1 AC242852.2-201ENST00000615738 1807 ntBASIC24.46■■□□□ 1.51
KDM3AQ9Y4C1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
KDM3AQ9Y4C1 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
KDM3AQ9Y4C1 AC123595.1-201ENST00000440769 1046 ntBASIC24.46■■□□□ 1.51
KDM3AQ9Y4C1 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC24.46■■□□□ 1.51
KDM3AQ9Y4C1 AC012414.1-201ENST00000556676 535 ntBASIC24.46■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms