Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
ZCCHC3Q9NUD5 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
ZCCHC3Q9NUD5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 AL031602.1-201ENST00000633169 911 ntBASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 SYT6-210ENST00000641643 1587 ntBASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.41■□□□□ 0.86
ZCCHC3Q9NUD5 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
ZCCHC3Q9NUD5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
ZCCHC3Q9NUD5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZCCHC3Q9NUD5 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
ZCCHC3Q9NUD5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.4■□□□□ 0.86
ZCCHC3Q9NUD5 DUX4L19-201ENST00000557448 1267 ntBASIC20.4■□□□□ 0.86
ZCCHC3Q9NUD5 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
ZCCHC3Q9NUD5 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC20.4■□□□□ 0.86
ZCCHC3Q9NUD5 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZCCHC3Q9NUD5 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZCCHC3Q9NUD5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.39■□□□□ 0.86
ZCCHC3Q9NUD5 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZCCHC3Q9NUD5 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.39■□□□□ 0.86
ZCCHC3Q9NUD5 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
ZCCHC3Q9NUD5 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
ZCCHC3Q9NUD5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
ZCCHC3Q9NUD5 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 OR2I1P-207ENST00000453522 948 ntBASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
ZCCHC3Q9NUD5 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 SERBP1P1-201ENST00000396021 1160 ntBASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
ZCCHC3Q9NUD5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 AL138724.1-201ENST00000606771 1088 ntBASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.37■□□□□ 0.85
ZCCHC3Q9NUD5 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms