Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRIM39Q9HCM9 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 JTB-203ENST00000368589 1216 ntTSL 2 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRIM39Q9HCM9 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 AC068473.5-201ENST00000616428 2072 ntBASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 MIR935-201ENST00000401179 91 ntBASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 AL354811.1-201ENST00000610286 706 ntBASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 AC105233.4-201ENST00000642045 216 ntBASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 C9orf163-202ENST00000624034 2573 ntBASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.52■■□□□ 1.04
TRIM39Q9HCM9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TRIM39Q9HCM9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.51■■□□□ 1.03
TRIM39Q9HCM9 AC012414.1-201ENST00000556676 535 ntBASIC21.51■■□□□ 1.03
TRIM39Q9HCM9 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.51■■□□□ 1.03
TRIM39Q9HCM9 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
TRIM39Q9HCM9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
TRIM39Q9HCM9 AC087742.1-201ENST00000575880 1738 ntBASIC21.51■■□□□ 1.03
TRIM39Q9HCM9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TRIM39Q9HCM9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 AC079089.2-201ENST00000531211 1277 ntBASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
TRIM39Q9HCM9 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
TRIM39Q9HCM9 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TRIM39Q9HCM9 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM39Q9HCM9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 261.8 ms