Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.11■□□□□ 0.65
LIME1Q9H400 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.11■□□□□ 0.65
LIME1Q9H400 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.11■□□□□ 0.65
LIME1Q9H400 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.11■□□□□ 0.65
LIME1Q9H400 RAP2CP1-201ENST00000605103 478 ntBASIC19.11■□□□□ 0.65
LIME1Q9H400 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.11■□□□□ 0.65
LIME1Q9H400 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.11■□□□□ 0.65
LIME1Q9H400 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.11■□□□□ 0.65
LIME1Q9H400 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
LIME1Q9H400 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.1■□□□□ 0.65
LIME1Q9H400 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIME1Q9H400 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
LIME1Q9H400 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIME1Q9H400 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
LIME1Q9H400 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
LIME1Q9H400 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.1■□□□□ 0.65
LIME1Q9H400 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC19.1■□□□□ 0.65
LIME1Q9H400 AC233723.2-201ENST00000623798 2106 ntBASIC19.1■□□□□ 0.65
LIME1Q9H400 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.1■□□□□ 0.65
LIME1Q9H400 EP400NL-214ENST00000641289 2402 ntBASIC19.1■□□□□ 0.65
LIME1Q9H400 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.1■□□□□ 0.65
LIME1Q9H400 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.09■□□□□ 0.65
LIME1Q9H400 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.09■□□□□ 0.65
LIME1Q9H400 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
LIME1Q9H400 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIME1Q9H400 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.09■□□□□ 0.65
LIME1Q9H400 AC006015.1-201ENST00000429970 570 ntBASIC19.09■□□□□ 0.65
LIME1Q9H400 AP005435.1-201ENST00000529293 1178 ntBASIC19.09■□□□□ 0.65
LIME1Q9H400 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC19.09■□□□□ 0.65
LIME1Q9H400 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.09■□□□□ 0.65
LIME1Q9H400 AC073111.5-205ENST00000641717 521 ntBASIC19.09■□□□□ 0.65
LIME1Q9H400 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.09■□□□□ 0.65
LIME1Q9H400 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIME1Q9H400 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
LIME1Q9H400 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIME1Q9H400 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIME1Q9H400 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
LIME1Q9H400 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIME1Q9H400 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC19.08■□□□□ 0.65
LIME1Q9H400 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
LIME1Q9H400 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.08■□□□□ 0.65
LIME1Q9H400 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
LIME1Q9H400 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIME1Q9H400 AC016769.1-201ENST00000409132 1010 ntBASIC19.08■□□□□ 0.64
LIME1Q9H400 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
LIME1Q9H400 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.08■□□□□ 0.64
LIME1Q9H400 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.08■□□□□ 0.64
LIME1Q9H400 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
LIME1Q9H400 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
LIME1Q9H400 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.08■□□□□ 0.64
LIME1Q9H400 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
LIME1Q9H400 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.07■□□□□ 0.64
LIME1Q9H400 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
LIME1Q9H400 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
LIME1Q9H400 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
LIME1Q9H400 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIME1Q9H400 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIME1Q9H400 DUSP8P3-201ENST00000399571 1760 ntBASIC19.07■□□□□ 0.64
LIME1Q9H400 ESRRAP2-201ENST00000418437 1549 ntBASIC19.07■□□□□ 0.64
LIME1Q9H400 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
LIME1Q9H400 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.07■□□□□ 0.64
LIME1Q9H400 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.07■□□□□ 0.64
LIME1Q9H400 AC137761.2-201ENST00000561729 223 ntBASIC19.07■□□□□ 0.64
LIME1Q9H400 AC145350.3-201ENST00000569033 163 ntBASIC19.07■□□□□ 0.64
LIME1Q9H400 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.07■□□□□ 0.64
LIME1Q9H400 AC105233.4-201ENST00000642045 216 ntBASIC19.07■□□□□ 0.64
LIME1Q9H400 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
LIME1Q9H400 C1orf229-201ENST00000623686 2258 ntBASIC19.07■□□□□ 0.64
LIME1Q9H400 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIME1Q9H400 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIME1Q9H400 AC092068.2-201ENST00000590491 1708 ntBASIC19.06■□□□□ 0.64
LIME1Q9H400 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIME1Q9H400 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIME1Q9H400 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.06■□□□□ 0.64
LIME1Q9H400 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 ABHD17AP1-201ENST00000358206 933 ntBASIC19.06■□□□□ 0.64
LIME1Q9H400 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIME1Q9H400 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.06■□□□□ 0.64
LIME1Q9H400 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.06■□□□□ 0.64
LIME1Q9H400 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.06■□□□□ 0.64
LIME1Q9H400 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.06■□□□□ 0.64
LIME1Q9H400 AL499627.2-201ENST00000606283 725 ntBASIC19.06■□□□□ 0.64
LIME1Q9H400 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
LIME1Q9H400 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIME1Q9H400 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
LIME1Q9H400 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.06■□□□□ 0.64
LIME1Q9H400 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
LIME1Q9H400 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
LIME1Q9H400 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms