Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL12A1Q99715 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL12A1Q99715 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.29■□□□□ 0.68
COL12A1Q99715 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.29■□□□□ 0.68
COL12A1Q99715 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL12A1Q99715 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.29■□□□□ 0.68
COL12A1Q99715 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.29■□□□□ 0.68
COL12A1Q99715 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL12A1Q99715 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL12A1Q99715 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL12A1Q99715 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL12A1Q99715 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
COL12A1Q99715 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL12A1Q99715 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL12A1Q99715 AC079140.4-201ENST00000507448 529 ntBASIC19.28■□□□□ 0.68
COL12A1Q99715 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.28■□□□□ 0.68
COL12A1Q99715 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC19.28■□□□□ 0.68
COL12A1Q99715 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL12A1Q99715 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
COL12A1Q99715 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.28■□□□□ 0.68
COL12A1Q99715 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL12A1Q99715 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC19.28■□□□□ 0.68
COL12A1Q99715 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL12A1Q99715 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.28■□□□□ 0.68
COL12A1Q99715 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.28■□□□□ 0.68
COL12A1Q99715 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.28■□□□□ 0.68
COL12A1Q99715 HLA-L-211ENST00000482052 1765 ntBASIC19.28■□□□□ 0.68
COL12A1Q99715 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL12A1Q99715 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC19.27■□□□□ 0.68
COL12A1Q99715 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL12A1Q99715 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.27■□□□□ 0.68
COL12A1Q99715 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.27■□□□□ 0.68
COL12A1Q99715 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.26■□□□□ 0.67
COL12A1Q99715 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.26■□□□□ 0.67
COL12A1Q99715 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.26■□□□□ 0.67
COL12A1Q99715 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL12A1Q99715 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL12A1Q99715 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL12A1Q99715 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL12A1Q99715 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL12A1Q99715 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.26■□□□□ 0.67
COL12A1Q99715 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.26■□□□□ 0.67
COL12A1Q99715 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL12A1Q99715 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL12A1Q99715 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL12A1Q99715 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL12A1Q99715 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
COL12A1Q99715 BX088651.1-201ENST00000540551 451 ntBASIC19.26■□□□□ 0.67
COL12A1Q99715 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.26■□□□□ 0.67
COL12A1Q99715 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL12A1Q99715 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.26■□□□□ 0.67
COL12A1Q99715 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL12A1Q99715 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.26■□□□□ 0.67
COL12A1Q99715 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
COL12A1Q99715 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL12A1Q99715 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.25■□□□□ 0.67
COL12A1Q99715 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
COL12A1Q99715 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
COL12A1Q99715 MYC-209ENST00000641252 345 ntBASIC19.25■□□□□ 0.67
COL12A1Q99715 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.25■□□□□ 0.67
COL12A1Q99715 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL12A1Q99715 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL12A1Q99715 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.24■□□□□ 0.67
COL12A1Q99715 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
COL12A1Q99715 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL12A1Q99715 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.24■□□□□ 0.67
COL12A1Q99715 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.24■□□□□ 0.67
COL12A1Q99715 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.24■□□□□ 0.67
COL12A1Q99715 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL12A1Q99715 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
COL12A1Q99715 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL12A1Q99715 AC026366.1-201ENST00000488803 879 ntBASIC19.23■□□□□ 0.67
COL12A1Q99715 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL12A1Q99715 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC19.23■□□□□ 0.67
COL12A1Q99715 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL12A1Q99715 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL12A1Q99715 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.23■□□□□ 0.67
COL12A1Q99715 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.23■□□□□ 0.67
COL12A1Q99715 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.23■□□□□ 0.67
COL12A1Q99715 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
COL12A1Q99715 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL12A1Q99715 AC144652.1-201ENST00000609974 1624 ntBASIC19.23■□□□□ 0.67
COL12A1Q99715 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.23■□□□□ 0.67
COL12A1Q99715 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms