Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.29■■□□□ 1
LMX1AQ8TE12 AC079140.4-201ENST00000507448 529 ntBASIC21.29■■□□□ 1
LMX1AQ8TE12 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.29■■□□□ 1
LMX1AQ8TE12 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LMX1AQ8TE12 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LMX1AQ8TE12 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LMX1AQ8TE12 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.29■■□□□ 1
LMX1AQ8TE12 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.29■■□□□ 1
LMX1AQ8TE12 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
LMX1AQ8TE12 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.28■■□□□ 1
LMX1AQ8TE12 KRT19P1-201ENST00000405746 1186 ntBASIC21.28■■□□□ 1
LMX1AQ8TE12 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.28■■□□□ 1
LMX1AQ8TE12 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.28■■□□□ 1
LMX1AQ8TE12 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.28■■□□□ 1
LMX1AQ8TE12 AC092068.2-201ENST00000590491 1708 ntBASIC21.28■■□□□ 1
LMX1AQ8TE12 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LMX1AQ8TE12 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.27■■□□□ 1
LMX1AQ8TE12 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.27■■□□□ 1
LMX1AQ8TE12 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.27■■□□□ 1
LMX1AQ8TE12 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
LMX1AQ8TE12 ID1-201ENST00000376105 1233 ntBASIC21.27■■□□□ 1
LMX1AQ8TE12 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.27■■□□□ 1
LMX1AQ8TE12 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC21.27■■□□□ 1
LMX1AQ8TE12 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LMX1AQ8TE12 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.27■□□□□ 0.99
LMX1AQ8TE12 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.27■□□□□ 0.99
LMX1AQ8TE12 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
LMX1AQ8TE12 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LMX1AQ8TE12 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LMX1AQ8TE12 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.24■□□□□ 0.99
LMX1AQ8TE12 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LMX1AQ8TE12 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.23■□□□□ 0.99
LMX1AQ8TE12 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.23■□□□□ 0.99
LMX1AQ8TE12 BID-214ENST00000617586 542 ntTSL 5 BASIC21.23■□□□□ 0.99
LMX1AQ8TE12 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LMX1AQ8TE12 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
LMX1AQ8TE12 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
LMX1AQ8TE12 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.23■□□□□ 0.99
LMX1AQ8TE12 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.22■□□□□ 0.99
LMX1AQ8TE12 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LMX1AQ8TE12 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
LMX1AQ8TE12 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LMX1AQ8TE12 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LMX1AQ8TE12 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.22■□□□□ 0.99
LMX1AQ8TE12 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LMX1AQ8TE12 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 AC005224.4-201ENST00000583262 1652 ntBASIC21.21■□□□□ 0.99
LMX1AQ8TE12 AC009237.3-201ENST00000393279 1427 ntBASIC21.21■□□□□ 0.99
LMX1AQ8TE12 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 ESRRAP2-201ENST00000418437 1549 ntBASIC21.21■□□□□ 0.99
LMX1AQ8TE12 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LMX1AQ8TE12 AC073111.5-205ENST00000641717 521 ntBASIC21.21■□□□□ 0.99
LMX1AQ8TE12 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms