Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC092068.2-201ENST00000590491 1708 ntBASIC20.17■□□□□ 0.82
BEST3Q8N1M1 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 KRT18P14-201ENST00000534205 1250 ntBASIC20.17■□□□□ 0.82
BEST3Q8N1M1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
BEST3Q8N1M1 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
BEST3Q8N1M1 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
BEST3Q8N1M1 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
BEST3Q8N1M1 AC010141.3-201ENST00000456659 717 ntBASIC20.16■□□□□ 0.82
BEST3Q8N1M1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.16■□□□□ 0.82
BEST3Q8N1M1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BEST3Q8N1M1 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BEST3Q8N1M1 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
BEST3Q8N1M1 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
BEST3Q8N1M1 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 TERF1P2-201ENST00000583350 1212 ntBASIC20.15■□□□□ 0.82
BEST3Q8N1M1 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
BEST3Q8N1M1 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
BEST3Q8N1M1 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
BEST3Q8N1M1 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 AC022517.1-201ENST00000592429 346 ntBASIC20.13■□□□□ 0.81
BEST3Q8N1M1 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
BEST3Q8N1M1 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 IKBKGP1-201ENST00000612193 1073 ntBASIC20.12■□□□□ 0.81
BEST3Q8N1M1 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.12■□□□□ 0.81
BEST3Q8N1M1 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 NTF6G-201ENST00000591094 616 ntBASIC20.11■□□□□ 0.81
BEST3Q8N1M1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
BEST3Q8N1M1 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BEST3Q8N1M1 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BEST3Q8N1M1 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BEST3Q8N1M1 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms