Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 APTR-203ENST00000430801 583 ntTSL 5 BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CSMD3Q7Z407 FAM201B-201ENST00000458407 597 ntBASIC15.32■□□□□ 0.04
CSMD3Q7Z407 LINC01529-204ENST00000636474 1715 ntBASIC15.32■□□□□ 0.04
CSMD3Q7Z407 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 DUSP5P2-201ENST00000426873 1033 ntBASIC15.31■□□□□ 0.04
CSMD3Q7Z407 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 PXK-203ENST00000383715 1756 ntTSL 5 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 DUSP8P5-201ENST00000422884 1815 ntBASIC15.31■□□□□ 0.04
CSMD3Q7Z407 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 AC092118.2-201ENST00000613495 667 ntBASIC15.31■□□□□ 0.04
CSMD3Q7Z407 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 MFF-207ENST00000409565 1548 ntTSL 2 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 CASP6-205ENST00000505486 538 ntTSL 4 BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CSMD3Q7Z407 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CSMD3Q7Z407 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 AC133552.2-202ENST00000575694 574 ntBASIC15.29■□□□□ 0.04
CSMD3Q7Z407 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 MYC-209ENST00000641252 345 ntBASIC15.29■□□□□ 0.04
CSMD3Q7Z407 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC15.29■□□□□ 0.04
CSMD3Q7Z407 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 AC079140.4-201ENST00000507448 529 ntBASIC15.28■□□□□ 0.04
CSMD3Q7Z407 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 KRT18P29-201ENST00000397031 1267 ntBASIC15.28■□□□□ 0.04
CSMD3Q7Z407 PPP1R14BP2-201ENST00000426284 444 ntBASIC15.28■□□□□ 0.04
CSMD3Q7Z407 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC15.28■□□□□ 0.04
CSMD3Q7Z407 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CSMD3Q7Z407 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CSMD3Q7Z407 AC138932.3-201ENST00000567634 1902 ntBASIC15.27■□□□□ 0.04
CSMD3Q7Z407 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.27■□□□□ 0.04
CSMD3Q7Z407 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 SMUG1P1-201ENST00000590640 811 ntBASIC15.27■□□□□ 0.03
CSMD3Q7Z407 AC145676.1-201ENST00000514988 2004 ntBASIC15.27■□□□□ 0.03
CSMD3Q7Z407 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 AC105036.2-201ENST00000569468 176 ntBASIC15.27■□□□□ 0.03
CSMD3Q7Z407 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC15.27■□□□□ 0.03
CSMD3Q7Z407 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CSMD3Q7Z407 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms