Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
RNF111Q6ZNA4 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 AC092667.1-201ENST00000434301 2586 ntBASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
RNF111Q6ZNA4 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.08■□□□□ 0.97
RNF111Q6ZNA4 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.08■□□□□ 0.96
RNF111Q6ZNA4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.08■□□□□ 0.96
RNF111Q6ZNA4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
RNF111Q6ZNA4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
RNF111Q6ZNA4 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.08■□□□□ 0.96
RNF111Q6ZNA4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 AC010542.4-201ENST00000563151 1910 ntBASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RNF111Q6ZNA4 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF111Q6ZNA4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF111Q6ZNA4 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RNF111Q6ZNA4 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.06■□□□□ 0.96
RNF111Q6ZNA4 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RNF111Q6ZNA4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RNF111Q6ZNA4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 AC087742.1-201ENST00000575880 1738 ntBASIC21.04■□□□□ 0.96
RNF111Q6ZNA4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
RNF111Q6ZNA4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF111Q6ZNA4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF111Q6ZNA4 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF111Q6ZNA4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
RNF111Q6ZNA4 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.02■□□□□ 0.96
RNF111Q6ZNA4 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
RNF111Q6ZNA4 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RNF111Q6ZNA4 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms