Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PDLIM3Q53GG5 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 ID1-201ENST00000376105 1233 ntBASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PDLIM3Q53GG5 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC17.91■□□□□ 0.46
PDLIM3Q53GG5 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 AL137784.2-201ENST00000607332 1000 ntBASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 AL136967.2-201ENST00000623968 743 ntBASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 AL353803.4-201ENST00000565882 1934 ntBASIC17.9■□□□□ 0.46
PDLIM3Q53GG5 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PDLIM3Q53GG5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
PDLIM3Q53GG5 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
PDLIM3Q53GG5 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 MIR4281-201ENST00000580852 62 ntBASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
PDLIM3Q53GG5 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 AC024257.2-201ENST00000549699 147 ntBASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 AF213884.3-201ENST00000563833 479 ntBASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
PDLIM3Q53GG5 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
PDLIM3Q53GG5 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms