Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CCDC58Q4VC31 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 NTF6A-201ENST00000591175 560 ntBASIC19.35■□□□□ 0.69
CCDC58Q4VC31 PVT1_1.1-201ENST00000615125 194 ntBASIC19.35■□□□□ 0.69
CCDC58Q4VC31 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 AC007952.6-201ENST00000573168 2673 ntBASIC19.35■□□□□ 0.69
CCDC58Q4VC31 AC003957.1-201ENST00000625108 2673 ntBASIC19.35■□□□□ 0.69
CCDC58Q4VC31 LINC01960-201ENST00000563759 1884 ntBASIC19.35■□□□□ 0.69
CCDC58Q4VC31 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CCDC58Q4VC31 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 AC009086.3-201ENST00000623486 1008 ntBASIC19.34■□□□□ 0.69
CCDC58Q4VC31 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 AC026310.3-201ENST00000625186 2373 ntBASIC19.34■□□□□ 0.69
CCDC58Q4VC31 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC58Q4VC31 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC58Q4VC31 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC58Q4VC31 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC58Q4VC31 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC58Q4VC31 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC58Q4VC31 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CCDC58Q4VC31 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 AC010542.4-201ENST00000563151 1910 ntBASIC19.33■□□□□ 0.68
CCDC58Q4VC31 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC58Q4VC31 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 ABHD17AP5-201ENST00000580133 923 ntBASIC19.32■□□□□ 0.68
CCDC58Q4VC31 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC58Q4VC31 FAM99A-202ENST00000538190 1989 ntBASIC19.32■□□□□ 0.68
CCDC58Q4VC31 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC58Q4VC31 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC58Q4VC31 DUX4L4-201ENST00000566884 1269 ntBASIC19.3■□□□□ 0.68
CCDC58Q4VC31 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms