Protein–RNA interactions for Protein: Q12829

RAB40B, Ras-related protein Rab-40B, humanhuman

Predictions only

Length 278 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40BQ12829 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.46■□□□□ 0.71
RAB40BQ12829 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
RAB40BQ12829 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
RAB40BQ12829 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
RAB40BQ12829 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
RAB40BQ12829 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
RAB40BQ12829 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.45■□□□□ 0.7
RAB40BQ12829 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RAB40BQ12829 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.45■□□□□ 0.7
RAB40BQ12829 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RAB40BQ12829 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.45■□□□□ 0.7
RAB40BQ12829 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.45■□□□□ 0.7
RAB40BQ12829 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RAB40BQ12829 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
RAB40BQ12829 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.45■□□□□ 0.7
RAB40BQ12829 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.45■□□□□ 0.7
RAB40BQ12829 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RAB40BQ12829 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.45■□□□□ 0.7
RAB40BQ12829 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RAB40BQ12829 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 AC004687.1-201ENST00000579003 1625 ntBASIC19.44■□□□□ 0.7
RAB40BQ12829 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 AC073130.3-201ENST00000624389 2278 ntBASIC19.44■□□□□ 0.7
RAB40BQ12829 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.44■□□□□ 0.7
RAB40BQ12829 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
RAB40BQ12829 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RAB40BQ12829 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.44■□□□□ 0.7
RAB40BQ12829 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
RAB40BQ12829 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.43■□□□□ 0.7
RAB40BQ12829 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.43■□□□□ 0.7
RAB40BQ12829 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.43■□□□□ 0.7
RAB40BQ12829 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.43■□□□□ 0.7
RAB40BQ12829 MIR6722-201ENST00000617286 78 ntBASIC19.43■□□□□ 0.7
RAB40BQ12829 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.43■□□□□ 0.7
RAB40BQ12829 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
RAB40BQ12829 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.43■□□□□ 0.7
RAB40BQ12829 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RAB40BQ12829 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.43■□□□□ 0.7
RAB40BQ12829 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAB40BQ12829 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAB40BQ12829 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAB40BQ12829 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.42■□□□□ 0.7
RAB40BQ12829 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RAB40BQ12829 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.42■□□□□ 0.7
RAB40BQ12829 NTF6A-201ENST00000591175 560 ntBASIC19.42■□□□□ 0.7
RAB40BQ12829 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RAB40BQ12829 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.42■□□□□ 0.7
RAB40BQ12829 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.42■□□□□ 0.7
RAB40BQ12829 FEM1AP4-201ENST00000443167 1987 ntBASIC19.42■□□□□ 0.7
RAB40BQ12829 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAB40BQ12829 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAB40BQ12829 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.42■□□□□ 0.7
RAB40BQ12829 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
RAB40BQ12829 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RAB40BQ12829 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
RAB40BQ12829 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.41■□□□□ 0.7
RAB40BQ12829 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.41■□□□□ 0.7
RAB40BQ12829 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 MIR4508-201ENST00000584178 70 ntBASIC19.41■□□□□ 0.7
RAB40BQ12829 HSD17B1P1-201ENST00000590052 955 ntBASIC19.41■□□□□ 0.7
RAB40BQ12829 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
RAB40BQ12829 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB40BQ12829 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.41■□□□□ 0.7
RAB40BQ12829 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RAB40BQ12829 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC19.4■□□□□ 0.7
RAB40BQ12829 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAB40BQ12829 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAB40BQ12829 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAB40BQ12829 AC010980.1-201ENST00000587192 1142 ntBASIC19.4■□□□□ 0.7
RAB40BQ12829 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAB40BQ12829 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAB40BQ12829 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms