Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
YBX1P67809 AC242852.2-201ENST00000615738 1807 ntBASIC21.27■□□□□ 0.99
YBX1P67809 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
YBX1P67809 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
YBX1P67809 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
YBX1P67809 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
YBX1P67809 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
YBX1P67809 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.26■□□□□ 0.99
YBX1P67809 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.26■□□□□ 0.99
YBX1P67809 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.26■□□□□ 0.99
YBX1P67809 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
YBX1P67809 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
YBX1P67809 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.25■□□□□ 0.99
YBX1P67809 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
YBX1P67809 AC139530.1-201ENST00000575312 1977 ntBASIC21.25■□□□□ 0.99
YBX1P67809 SLC47A1P1-202ENST00000449666 945 ntBASIC21.25■□□□□ 0.99
YBX1P67809 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.25■□□□□ 0.99
YBX1P67809 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
YBX1P67809 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
YBX1P67809 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.25■□□□□ 0.99
YBX1P67809 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
YBX1P67809 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
YBX1P67809 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.24■□□□□ 0.99
YBX1P67809 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.24■□□□□ 0.99
YBX1P67809 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.24■□□□□ 0.99
YBX1P67809 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.24■□□□□ 0.99
YBX1P67809 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
YBX1P67809 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
YBX1P67809 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
YBX1P67809 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.23■□□□□ 0.99
YBX1P67809 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 SUDS3P1-201ENST00000505831 966 ntBASIC21.23■□□□□ 0.99
YBX1P67809 AC005837.3-201ENST00000612163 286 ntBASIC21.23■□□□□ 0.99
YBX1P67809 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.23■□□□□ 0.99
YBX1P67809 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.23■□□□□ 0.99
YBX1P67809 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
YBX1P67809 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
YBX1P67809 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.22■□□□□ 0.99
YBX1P67809 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
YBX1P67809 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
YBX1P67809 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
YBX1P67809 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
YBX1P67809 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.22■□□□□ 0.99
YBX1P67809 AP001330.3-201ENST00000520123 633 ntBASIC21.22■□□□□ 0.99
YBX1P67809 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
YBX1P67809 AC008764.7-201ENST00000593779 1081 ntBASIC21.22■□□□□ 0.99
YBX1P67809 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
YBX1P67809 AC080038.3-201ENST00000623346 1952 ntBASIC21.22■□□□□ 0.99
YBX1P67809 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
YBX1P67809 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
YBX1P67809 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
YBX1P67809 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
YBX1P67809 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
YBX1P67809 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
YBX1P67809 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
YBX1P67809 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.21■□□□□ 0.99
YBX1P67809 AF213884.3-201ENST00000563833 479 ntBASIC21.21■□□□□ 0.99
YBX1P67809 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC21.21■□□□□ 0.99
YBX1P67809 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
YBX1P67809 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
YBX1P67809 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
YBX1P67809 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.21■□□□□ 0.99
YBX1P67809 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
YBX1P67809 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
YBX1P67809 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
YBX1P67809 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.2■□□□□ 0.98
YBX1P67809 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
YBX1P67809 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
YBX1P67809 EDA-201ENST00000338901 1233 ntBASIC21.2■□□□□ 0.98
YBX1P67809 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
YBX1P67809 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.2■□□□□ 0.98
YBX1P67809 AC133561.4-201ENST00000566112 224 ntBASIC21.2■□□□□ 0.98
YBX1P67809 AL355001.2-201ENST00000620617 1191 ntBASIC21.2■□□□□ 0.98
YBX1P67809 AL136967.2-201ENST00000623968 743 ntBASIC21.2■□□□□ 0.98
YBX1P67809 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
YBX1P67809 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
YBX1P67809 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
YBX1P67809 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
YBX1P67809 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.2■□□□□ 0.98
YBX1P67809 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
YBX1P67809 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms