Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC21.6■■□□□ 1.05
LIMK1P53667 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
LIMK1P53667 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
LIMK1P53667 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
LIMK1P53667 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.6■■□□□ 1.05
LIMK1P53667 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.6■■□□□ 1.05
LIMK1P53667 ITM2C-210ENST00000620962 501 ntBASIC21.6■■□□□ 1.05
LIMK1P53667 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.6■■□□□ 1.05
LIMK1P53667 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.6■■□□□ 1.05
LIMK1P53667 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LIMK1P53667 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
LIMK1P53667 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.59■■□□□ 1.05
LIMK1P53667 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.59■■□□□ 1.05
LIMK1P53667 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
LIMK1P53667 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
LIMK1P53667 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.59■■□□□ 1.05
LIMK1P53667 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LIMK1P53667 AC079834.2-201ENST00000609776 1949 ntBASIC21.59■■□□□ 1.05
LIMK1P53667 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LIMK1P53667 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMK1P53667 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.58■■□□□ 1.05
LIMK1P53667 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMK1P53667 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
LIMK1P53667 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.58■■□□□ 1.05
LIMK1P53667 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.58■■□□□ 1.05
LIMK1P53667 AC005181.1-201ENST00000604782 1256 ntBASIC21.58■■□□□ 1.05
LIMK1P53667 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
LIMK1P53667 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.58■■□□□ 1.05
LIMK1P53667 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
LIMK1P53667 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMK1P53667 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.57■■□□□ 1.04
LIMK1P53667 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMK1P53667 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.57■■□□□ 1.04
LIMK1P53667 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
LIMK1P53667 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.57■■□□□ 1.04
LIMK1P53667 AC007322.1-201ENST00000426983 750 ntBASIC21.57■■□□□ 1.04
LIMK1P53667 POU5F1P3-201ENST00000428824 1078 ntBASIC21.57■■□□□ 1.04
LIMK1P53667 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.57■■□□□ 1.04
LIMK1P53667 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.57■■□□□ 1.04
LIMK1P53667 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.57■■□□□ 1.04
LIMK1P53667 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC21.57■■□□□ 1.04
LIMK1P53667 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMK1P53667 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
LIMK1P53667 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMK1P53667 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
LIMK1P53667 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMK1P53667 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.56■■□□□ 1.04
LIMK1P53667 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.56■■□□□ 1.04
LIMK1P53667 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.56■■□□□ 1.04
LIMK1P53667 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.56■■□□□ 1.04
LIMK1P53667 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.56■■□□□ 1.04
LIMK1P53667 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMK1P53667 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMK1P53667 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LIMK1P53667 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.55■■□□□ 1.04
LIMK1P53667 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.55■■□□□ 1.04
LIMK1P53667 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.55■■□□□ 1.04
LIMK1P53667 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
LIMK1P53667 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
LIMK1P53667 DUX4L16-201ENST00000555130 1264 ntBASIC21.55■■□□□ 1.04
LIMK1P53667 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
LIMK1P53667 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
LIMK1P53667 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMK1P53667 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
LIMK1P53667 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LIMK1P53667 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.55■■□□□ 1.04
LIMK1P53667 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.54■■□□□ 1.04
LIMK1P53667 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMK1P53667 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
LIMK1P53667 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.54■■□□□ 1.04
LIMK1P53667 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.54■■□□□ 1.04
LIMK1P53667 AC079140.4-201ENST00000507448 529 ntBASIC21.54■■□□□ 1.04
LIMK1P53667 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
LIMK1P53667 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
LIMK1P53667 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
LIMK1P53667 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LIMK1P53667 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LIMK1P53667 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMK1P53667 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LIMK1P53667 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.53■■□□□ 1.04
LIMK1P53667 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LIMK1P53667 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.53■■□□□ 1.04
LIMK1P53667 AC087239.1-201ENST00000622671 572 ntBASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms