Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX9P48436 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.31■■□□□ 1.16
SOX9P48436 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
SOX9P48436 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22.31■■□□□ 1.16
SOX9P48436 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22.31■■□□□ 1.16
SOX9P48436 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX9P48436 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
SOX9P48436 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
SOX9P48436 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.31■■□□□ 1.16
SOX9P48436 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX9P48436 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
SOX9P48436 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SOX9P48436 ABHD17AP1-201ENST00000358206 933 ntBASIC22.3■■□□□ 1.16
SOX9P48436 KRT18P11-201ENST00000435214 1283 ntBASIC22.3■■□□□ 1.16
SOX9P48436 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
SOX9P48436 MFSD11-216ENST00000590393 1141 ntBASIC22.3■■□□□ 1.16
SOX9P48436 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
SOX9P48436 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC22.3■■□□□ 1.16
SOX9P48436 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
SOX9P48436 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SOX9P48436 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SOX9P48436 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
SOX9P48436 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
SOX9P48436 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
SOX9P48436 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC22.29■■□□□ 1.16
SOX9P48436 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC22.29■■□□□ 1.16
SOX9P48436 AC104187.1-201ENST00000607510 612 ntBASIC22.29■■□□□ 1.16
SOX9P48436 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
SOX9P48436 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.29■■□□□ 1.16
SOX9P48436 DUSP8P3-201ENST00000399571 1760 ntBASIC22.29■■□□□ 1.16
SOX9P48436 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC22.29■■□□□ 1.16
SOX9P48436 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
SOX9P48436 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.28■■□□□ 1.16
SOX9P48436 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 AC005224.4-201ENST00000583262 1652 ntBASIC22.28■■□□□ 1.16
SOX9P48436 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC22.28■■□□□ 1.16
SOX9P48436 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
SOX9P48436 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
SOX9P48436 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.28■■□□□ 1.16
SOX9P48436 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SOX9P48436 PXK-203ENST00000383715 1756 ntTSL 5 BASIC22.27■■□□□ 1.16
SOX9P48436 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SOX9P48436 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.27■■□□□ 1.16
SOX9P48436 GPX1P1-201ENST00000388829 606 ntBASIC22.27■■□□□ 1.16
SOX9P48436 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SOX9P48436 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SOX9P48436 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SOX9P48436 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SOX9P48436 MAZ-216ENST00000616501 991 ntTSL 5 BASIC22.27■■□□□ 1.16
SOX9P48436 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SOX9P48436 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SOX9P48436 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SOX9P48436 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SOX9P48436 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
SOX9P48436 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.26■■□□□ 1.15
SOX9P48436 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SOX9P48436 AL050303.2-201ENST00000619798 666 ntBASIC22.26■■□□□ 1.15
SOX9P48436 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SOX9P48436 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
SOX9P48436 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.26■■□□□ 1.15
SOX9P48436 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SOX9P48436 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SOX9P48436 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
SOX9P48436 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.25■■□□□ 1.15
SOX9P48436 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
SOX9P48436 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.25■■□□□ 1.15
SOX9P48436 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC22.25■■□□□ 1.15
SOX9P48436 MDK-213ENST00000617138 635 ntTSL 2 BASIC22.25■■□□□ 1.15
SOX9P48436 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.25■■□□□ 1.15
SOX9P48436 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SOX9P48436 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SOX9P48436 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SOX9P48436 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SOX9P48436 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SOX9P48436 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
SOX9P48436 KRT87P-202ENST00000534226 1464 ntBASIC22.24■■□□□ 1.15
SOX9P48436 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
SOX9P48436 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
SOX9P48436 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SOX9P48436 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SOX9P48436 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SOX9P48436 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.24■■□□□ 1.15
SOX9P48436 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SOX9P48436 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC22.23■■□□□ 1.15
SOX9P48436 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC22.23■■□□□ 1.15
SOX9P48436 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC22.23■■□□□ 1.15
SOX9P48436 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.23■■□□□ 1.15
SOX9P48436 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SOX9P48436 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC22.23■■□□□ 1.15
SOX9P48436 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
SOX9P48436 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
SOX9P48436 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.22■■□□□ 1.15
SOX9P48436 APTR-205ENST00000447009 902 ntTSL 2 BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms