Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RFX3P48380 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RFX3P48380 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.34■□□□□ 0.85
RFX3P48380 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.34■□□□□ 0.85
RFX3P48380 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.34■□□□□ 0.85
RFX3P48380 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.34■□□□□ 0.85
RFX3P48380 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.34■□□□□ 0.85
RFX3P48380 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.34■□□□□ 0.85
RFX3P48380 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
RFX3P48380 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RFX3P48380 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
RFX3P48380 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.33■□□□□ 0.85
RFX3P48380 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RFX3P48380 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RFX3P48380 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RFX3P48380 UNC93B3-201ENST00000308076 687 ntBASIC20.33■□□□□ 0.85
RFX3P48380 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.33■□□□□ 0.85
RFX3P48380 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
RFX3P48380 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.33■□□□□ 0.84
RFX3P48380 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.33■□□□□ 0.84
RFX3P48380 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RFX3P48380 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.33■□□□□ 0.84
RFX3P48380 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RFX3P48380 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RFX3P48380 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RFX3P48380 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
RFX3P48380 AC096631.2-201ENST00000436136 790 ntBASIC20.32■□□□□ 0.84
RFX3P48380 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
RFX3P48380 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RFX3P48380 GUSBP5-202ENST00000510805 1989 ntBASIC20.32■□□□□ 0.84
RFX3P48380 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
RFX3P48380 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
RFX3P48380 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
RFX3P48380 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.31■□□□□ 0.84
RFX3P48380 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.31■□□□□ 0.84
RFX3P48380 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.31■□□□□ 0.84
RFX3P48380 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
RFX3P48380 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RFX3P48380 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX3P48380 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX3P48380 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX3P48380 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX3P48380 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.3■□□□□ 0.84
RFX3P48380 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
RFX3P48380 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.3■□□□□ 0.84
RFX3P48380 AL136162.1-201ENST00000607711 1078 ntBASIC20.3■□□□□ 0.84
RFX3P48380 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RFX3P48380 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
RFX3P48380 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
RFX3P48380 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
RFX3P48380 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RFX3P48380 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
RFX3P48380 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
RFX3P48380 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
RFX3P48380 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.29■□□□□ 0.84
RFX3P48380 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.29■□□□□ 0.84
RFX3P48380 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
RFX3P48380 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.29■□□□□ 0.84
RFX3P48380 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 AC087742.1-201ENST00000575880 1738 ntBASIC20.29■□□□□ 0.84
RFX3P48380 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
RFX3P48380 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
RFX3P48380 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
RFX3P48380 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
RFX3P48380 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
RFX3P48380 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RFX3P48380 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
RFX3P48380 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFX3P48380 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
RFX3P48380 AL138724.1-201ENST00000606771 1088 ntBASIC20.28■□□□□ 0.84
RFX3P48380 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
RFX3P48380 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
RFX3P48380 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.28■□□□□ 0.84
RFX3P48380 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 ESRRAP2-201ENST00000418437 1549 ntBASIC20.27■□□□□ 0.84
RFX3P48380 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
RFX3P48380 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
RFX3P48380 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms