Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.41■□□□□ 0.86
SOX3P41225 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
SOX3P41225 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
SOX3P41225 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 AC007375.3-201ENST00000600936 2314 ntBASIC20.41■□□□□ 0.86
SOX3P41225 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SOX3P41225 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
SOX3P41225 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.4■□□□□ 0.86
SOX3P41225 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
SOX3P41225 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 AC010525.1-201ENST00000585559 441 ntBASIC20.4■□□□□ 0.86
SOX3P41225 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.4■□□□□ 0.86
SOX3P41225 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SOX3P41225 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.4■□□□□ 0.86
SOX3P41225 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
SOX3P41225 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.39■□□□□ 0.86
SOX3P41225 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SOX3P41225 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SOX3P41225 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SOX3P41225 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SOX3P41225 AC127496.7-201ENST00000625110 1798 ntBASIC20.39■□□□□ 0.86
SOX3P41225 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SOX3P41225 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.39■□□□□ 0.85
SOX3P41225 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.39■□□□□ 0.85
SOX3P41225 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SOX3P41225 OR2I1P-207ENST00000453522 948 ntBASIC20.39■□□□□ 0.85
SOX3P41225 AC126544.1-201ENST00000580842 1059 ntBASIC20.39■□□□□ 0.85
SOX3P41225 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.39■□□□□ 0.85
SOX3P41225 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.39■□□□□ 0.85
SOX3P41225 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.39■□□□□ 0.85
SOX3P41225 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SOX3P41225 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SOX3P41225 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SOX3P41225 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.38■□□□□ 0.85
SOX3P41225 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SOX3P41225 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SOX3P41225 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.38■□□□□ 0.85
SOX3P41225 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.38■□□□□ 0.85
SOX3P41225 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.38■□□□□ 0.85
SOX3P41225 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.38■□□□□ 0.85
SOX3P41225 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SOX3P41225 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.38■□□□□ 0.85
SOX3P41225 AC004687.1-201ENST00000579003 1625 ntBASIC20.38■□□□□ 0.85
SOX3P41225 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SOX3P41225 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.38■□□□□ 0.85
SOX3P41225 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SOX3P41225 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SOX3P41225 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SOX3P41225 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 AC137767.1-201ENST00000602918 1920 ntBASIC20.37■□□□□ 0.85
SOX3P41225 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.37■□□□□ 0.85
SOX3P41225 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 ECEL1P1-201ENST00000373592 1742 ntBASIC20.37■□□□□ 0.85
SOX3P41225 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SOX3P41225 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
SOX3P41225 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SOX3P41225 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SOX3P41225 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SOX3P41225 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SOX3P41225 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SOX3P41225 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SOX3P41225 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.36■□□□□ 0.85
SOX3P41225 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.36■□□□□ 0.85
SOX3P41225 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.36■□□□□ 0.85
SOX3P41225 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SOX3P41225 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.36■□□□□ 0.85
SOX3P41225 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
SOX3P41225 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SOX3P41225 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
SOX3P41225 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
SOX3P41225 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SOX3P41225 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SOX3P41225 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.35■□□□□ 0.85
SOX3P41225 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SOX3P41225 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SOX3P41225 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SOX3P41225 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SOX3P41225 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SOX3P41225 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
SOX3P41225 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SOX3P41225 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
SOX3P41225 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms