Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FREM3P0C091 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
FREM3P0C091 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.81■□□□□ 0.76
FREM3P0C091 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
FREM3P0C091 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.81■□□□□ 0.76
FREM3P0C091 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 AL162430.1-201ENST00000480705 870 ntBASIC19.81■□□□□ 0.76
FREM3P0C091 AC104564.3-201ENST00000582367 638 ntBASIC19.81■□□□□ 0.76
FREM3P0C091 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.81■□□□□ 0.76
FREM3P0C091 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
FREM3P0C091 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.81■□□□□ 0.76
FREM3P0C091 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.81■□□□□ 0.76
FREM3P0C091 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.81■□□□□ 0.76
FREM3P0C091 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
FREM3P0C091 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
FREM3P0C091 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
FREM3P0C091 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
FREM3P0C091 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
FREM3P0C091 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
FREM3P0C091 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.8■□□□□ 0.76
FREM3P0C091 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.8■□□□□ 0.76
FREM3P0C091 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.8■□□□□ 0.76
FREM3P0C091 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
FREM3P0C091 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.8■□□□□ 0.76
FREM3P0C091 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FREM3P0C091 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
FREM3P0C091 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.79■□□□□ 0.76
FREM3P0C091 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FREM3P0C091 AL354811.1-201ENST00000610286 706 ntBASIC19.79■□□□□ 0.76
FREM3P0C091 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FREM3P0C091 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
FREM3P0C091 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
FREM3P0C091 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FREM3P0C091 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.79■□□□□ 0.76
FREM3P0C091 AC123595.1-201ENST00000440769 1046 ntBASIC19.79■□□□□ 0.76
FREM3P0C091 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
FREM3P0C091 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.79■□□□□ 0.76
FREM3P0C091 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
FREM3P0C091 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
FREM3P0C091 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FREM3P0C091 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FREM3P0C091 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.78■□□□□ 0.76
FREM3P0C091 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.78■□□□□ 0.76
FREM3P0C091 TPRG1LP1-201ENST00000598702 760 ntBASIC19.78■□□□□ 0.76
FREM3P0C091 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FREM3P0C091 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FREM3P0C091 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.78■□□□□ 0.76
FREM3P0C091 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
FREM3P0C091 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.78■□□□□ 0.76
FREM3P0C091 IKBKGP1-201ENST00000612193 1073 ntBASIC19.78■□□□□ 0.76
FREM3P0C091 AC068587.7-201ENST00000641602 218 ntBASIC19.78■□□□□ 0.76
FREM3P0C091 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
FREM3P0C091 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
FREM3P0C091 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
FREM3P0C091 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.77■□□□□ 0.76
FREM3P0C091 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
FREM3P0C091 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.77■□□□□ 0.76
FREM3P0C091 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
FREM3P0C091 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.77■□□□□ 0.76
FREM3P0C091 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FREM3P0C091 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC19.77■□□□□ 0.76
FREM3P0C091 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.77■□□□□ 0.76
FREM3P0C091 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.77■□□□□ 0.76
FREM3P0C091 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FREM3P0C091 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
FREM3P0C091 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.77■□□□□ 0.75
FREM3P0C091 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.76■□□□□ 0.75
FREM3P0C091 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.76■□□□□ 0.75
FREM3P0C091 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FREM3P0C091 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
FREM3P0C091 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FREM3P0C091 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
FREM3P0C091 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
FREM3P0C091 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
FREM3P0C091 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FREM3P0C091 MIR6084-201ENST00000622012 110 ntBASIC19.76■□□□□ 0.75
FREM3P0C091 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
FREM3P0C091 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FREM3P0C091 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FREM3P0C091 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
FREM3P0C091 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FREM3P0C091 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
FREM3P0C091 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
FREM3P0C091 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
FREM3P0C091 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
FREM3P0C091 CCDC92B-201ENST00000575506 885 ntBASIC19.75■□□□□ 0.75
FREM3P0C091 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.75■□□□□ 0.75
FREM3P0C091 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.75■□□□□ 0.75
FREM3P0C091 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
FREM3P0C091 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.74■□□□□ 0.75
FREM3P0C091 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
FREM3P0C091 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
FREM3P0C091 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms