Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
VIMP08670 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
VIMP08670 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.79■■□□□ 1.08
VIMP08670 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.79■■□□□ 1.08
VIMP08670 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.79■■□□□ 1.08
VIMP08670 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.79■■□□□ 1.08
VIMP08670 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 AF106564.1-201ENST00000607058 2553 ntBASIC21.79■■□□□ 1.08
VIMP08670 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
VIMP08670 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.79■■□□□ 1.08
VIMP08670 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
VIMP08670 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VIMP08670 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.78■■□□□ 1.08
VIMP08670 AC011551.1-201ENST00000614101 683 ntBASIC21.78■■□□□ 1.08
VIMP08670 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VIMP08670 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VIMP08670 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 RNF165-205ENST00000588679 2904 ntBASIC21.77■■□□□ 1.08
VIMP08670 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
VIMP08670 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
VIMP08670 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.77■■□□□ 1.08
VIMP08670 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VIMP08670 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.08
VIMP08670 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
VIMP08670 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.77■■□□□ 1.07
VIMP08670 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.76■■□□□ 1.07
VIMP08670 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
VIMP08670 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
VIMP08670 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
VIMP08670 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VIMP08670 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
VIMP08670 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
VIMP08670 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.75■■□□□ 1.07
VIMP08670 Z98882.1-201ENST00000622160 2253 ntBASIC21.75■■□□□ 1.07
VIMP08670 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VIMP08670 SRP68-213ENST00000629930 165 ntTSL 5 BASIC21.75■■□□□ 1.07
VIMP08670 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
VIMP08670 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.75■■□□□ 1.07
VIMP08670 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
VIMP08670 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
VIMP08670 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.75■■□□□ 1.07
VIMP08670 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
VIMP08670 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.75■■□□□ 1.07
VIMP08670 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.75■■□□□ 1.07
VIMP08670 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
VIMP08670 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.74■■□□□ 1.07
VIMP08670 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VIMP08670 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.74■■□□□ 1.07
VIMP08670 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
VIMP08670 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
VIMP08670 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VIMP08670 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC21.74■■□□□ 1.07
VIMP08670 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VIMP08670 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.74■■□□□ 1.07
VIMP08670 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.74■■□□□ 1.07
VIMP08670 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
VIMP08670 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.73■■□□□ 1.07
VIMP08670 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
VIMP08670 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.73■■□□□ 1.07
VIMP08670 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.73■■□□□ 1.07
VIMP08670 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VIMP08670 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VIMP08670 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.73■■□□□ 1.07
VIMP08670 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.73■■□□□ 1.07
VIMP08670 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
VIMP08670 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
VIMP08670 AC144652.1-201ENST00000609974 1624 ntBASIC21.73■■□□□ 1.07
VIMP08670 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VIMP08670 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.72■■□□□ 1.07
VIMP08670 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.72■■□□□ 1.07
VIMP08670 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.72■■□□□ 1.07
VIMP08670 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VIMP08670 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
VIMP08670 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.72■■□□□ 1.07
VIMP08670 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms