Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.28■■□□□ 1
VPS4BO75351 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
VPS4BO75351 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
VPS4BO75351 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
VPS4BO75351 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
VPS4BO75351 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS4BO75351 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS4BO75351 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
VPS4BO75351 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC21.27■■□□□ 1
VPS4BO75351 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.27■■□□□ 1
VPS4BO75351 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.27■■□□□ 1
VPS4BO75351 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.27■■□□□ 1
VPS4BO75351 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
VPS4BO75351 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
VPS4BO75351 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VPS4BO75351 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VPS4BO75351 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.27■□□□□ 0.99
VPS4BO75351 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS4BO75351 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
VPS4BO75351 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
VPS4BO75351 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
VPS4BO75351 SRD5A1P1-201ENST00000442297 786 ntBASIC21.26■□□□□ 0.99
VPS4BO75351 AL031432.3-201ENST00000607698 485 ntBASIC21.26■□□□□ 0.99
VPS4BO75351 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS4BO75351 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS4BO75351 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS4BO75351 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS4BO75351 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS4BO75351 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
VPS4BO75351 DUX4L4-201ENST00000566884 1269 ntBASIC21.25■□□□□ 0.99
VPS4BO75351 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS4BO75351 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS4BO75351 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS4BO75351 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
VPS4BO75351 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
VPS4BO75351 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
VPS4BO75351 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS4BO75351 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS4BO75351 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 AC105265.2-201ENST00000467189 838 ntBASIC21.24■□□□□ 0.99
VPS4BO75351 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.24■□□□□ 0.99
VPS4BO75351 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.24■□□□□ 0.99
VPS4BO75351 AC007375.3-201ENST00000600936 2314 ntBASIC21.24■□□□□ 0.99
VPS4BO75351 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 LINC01960-201ENST00000563759 1884 ntBASIC21.24■□□□□ 0.99
VPS4BO75351 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS4BO75351 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS4BO75351 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS4BO75351 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.23■□□□□ 0.99
VPS4BO75351 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
VPS4BO75351 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
VPS4BO75351 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
VPS4BO75351 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
VPS4BO75351 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
VPS4BO75351 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.22■□□□□ 0.99
VPS4BO75351 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 AC024257.2-201ENST00000549699 147 ntBASIC21.22■□□□□ 0.99
VPS4BO75351 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.22■□□□□ 0.99
VPS4BO75351 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS4BO75351 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS4BO75351 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.22■□□□□ 0.99
VPS4BO75351 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VPS4BO75351 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
VPS4BO75351 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS4BO75351 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS4BO75351 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VPS4BO75351 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VPS4BO75351 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.21■□□□□ 0.99
VPS4BO75351 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms