Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 OXCT2P1-201ENST00000447263 1535 ntBASIC17.49■□□□□ 0.39
HOXA3O43365 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 ID1-201ENST00000376105 1233 ntBASIC17.49■□□□□ 0.39
HOXA3O43365 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.49■□□□□ 0.39
HOXA3O43365 DBI-210ENST00000542275 757 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXA3O43365 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXA3O43365 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HOXA3O43365 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
HOXA3O43365 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
HOXA3O43365 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXA3O43365 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
HOXA3O43365 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA3O43365 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXA3O43365 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
HOXA3O43365 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC17.48■□□□□ 0.39
HOXA3O43365 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXA3O43365 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXA3O43365 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXA3O43365 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXA3O43365 AC080038.1-201ENST00000611274 1154 ntBASIC17.48■□□□□ 0.39
HOXA3O43365 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 AP004607.4-201ENST00000530158 1459 ntBASIC17.48■□□□□ 0.39
HOXA3O43365 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HOXA3O43365 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXA3O43365 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXA3O43365 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HOXA3O43365 PREB-202ENST00000406567 1910 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXA3O43365 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXA3O43365 STX7-201ENST00000367937 1090 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXA3O43365 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
HOXA3O43365 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC17.47■□□□□ 0.39
HOXA3O43365 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.47■□□□□ 0.39
HOXA3O43365 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXA3O43365 AC006015.1-201ENST00000429970 570 ntBASIC17.47■□□□□ 0.39
HOXA3O43365 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXA3O43365 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXA3O43365 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXA3O43365 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
HOXA3O43365 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXA3O43365 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXA3O43365 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXA3O43365 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXA3O43365 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
HOXA3O43365 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA3O43365 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXA3O43365 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXA3O43365 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXA3O43365 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXA3O43365 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXA3O43365 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
HOXA3O43365 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
HOXA3O43365 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
HOXA3O43365 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA3O43365 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA3O43365 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXA3O43365 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXA3O43365 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXA3O43365 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA3O43365 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA3O43365 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA3O43365 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA3O43365 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXA3O43365 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXA3O43365 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXA3O43365 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXA3O43365 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC17.44■□□□□ 0.38
HOXA3O43365 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.44■□□□□ 0.38
HOXA3O43365 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 HSCB-202ENST00000398941 955 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA3O43365 KRT19P1-201ENST00000405746 1186 ntBASIC17.44■□□□□ 0.38
HOXA3O43365 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXA3O43365 AC079140.4-201ENST00000507448 529 ntBASIC17.44■□□□□ 0.38
HOXA3O43365 TESC-206ENST00000541210 936 ntTSL 3 BASIC17.44■□□□□ 0.38
HOXA3O43365 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.44■□□□□ 0.38
HOXA3O43365 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
HOXA3O43365 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HOXA3O43365 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HOXA3O43365 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms