Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
TRIM49D1C9J1S8 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRIM49D1C9J1S8 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
TRIM49D1C9J1S8 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 AC092028.1-203ENST00000608262 953 ntBASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TRIM49D1C9J1S8 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.77■■□□□ 1.08
TRIM49D1C9J1S8 AC005229.4-201ENST00000610085 2198 ntBASIC21.77■■□□□ 1.07
TRIM49D1C9J1S8 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM49D1C9J1S8 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM49D1C9J1S8 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.76■■□□□ 1.07
TRIM49D1C9J1S8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM49D1C9J1S8 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM49D1C9J1S8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM49D1C9J1S8 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRIM49D1C9J1S8 AC244015.2-201ENST00000616358 1861 ntBASIC21.76■■□□□ 1.07
TRIM49D1C9J1S8 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TRIM49D1C9J1S8 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 C17orf82-201ENST00000623772 1530 ntBASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
TRIM49D1C9J1S8 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 ME2-206ENST00000638410 2289 ntTSL 5 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 ME2-210ENST00000639255 2262 ntTSL 5 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
TRIM49D1C9J1S8 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 MTDHP2-201ENST00000601468 714 ntBASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
TRIM49D1C9J1S8 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRIM49D1C9J1S8 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms