Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC29.25■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 AL136967.2-201ENST00000623968 743 ntBASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SRD5A1P1-201ENST00000442297 786 ntBASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 AF213884.3-201ENST00000563833 479 ntBASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 MIR3181-201ENST00000578512 73 ntBASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC29.23■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC29.22■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC29.22■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC29.22■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 AC010525.1-201ENST00000585559 441 ntBASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC29.21■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
SENP3-EIF4A1A0A087X0R7 SERBP1P1-201ENST00000396021 1160 ntBASIC29.2■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC29.2■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC29.2■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 LINC01960-201ENST00000563759 1884 ntBASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC29.19■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 AC024257.2-201ENST00000549699 147 ntBASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 AC092437.1-201ENST00000624794 1048 ntBASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 AC133637.1-201ENST00000624115 1537 ntBASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 PTCHD3P2-201ENST00000424937 1205 ntBASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 SLC47A1P1-202ENST00000449666 945 ntBASIC29.17■■■□□ 2.26
SENP3-EIF4A1A0A087X0R7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC29.17■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms