Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 AC137767.1-201ENST00000602918 1920 ntBASIC20.67■□□□□ 0.9
ATG4BQ9Y4P1 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4BQ9Y4P1 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4BQ9Y4P1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.67■□□□□ 0.9
ATG4BQ9Y4P1 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ATG4BQ9Y4P1 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
ATG4BQ9Y4P1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.67■□□□□ 0.9
ATG4BQ9Y4P1 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.66■□□□□ 0.9
ATG4BQ9Y4P1 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 EP400NL-214ENST00000641289 2402 ntBASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ATG4BQ9Y4P1 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.9
ATG4BQ9Y4P1 AC242852.2-201ENST00000615738 1807 ntBASIC20.64■□□□□ 0.9
ATG4BQ9Y4P1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4BQ9Y4P1 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
ATG4BQ9Y4P1 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4BQ9Y4P1 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4BQ9Y4P1 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4BQ9Y4P1 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ATG4BQ9Y4P1 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4BQ9Y4P1 BX842568.3-201ENST00000418104 571 ntBASIC20.64■□□□□ 0.89
ATG4BQ9Y4P1 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4BQ9Y4P1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
ATG4BQ9Y4P1 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4BQ9Y4P1 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ATG4BQ9Y4P1 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 AC133561.4-201ENST00000566112 224 ntBASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 AC068587.7-201ENST00000641602 218 ntBASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 ECEL1P1-201ENST00000373592 1742 ntBASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.63■□□□□ 0.89
ATG4BQ9Y4P1 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 AC139530.1-201ENST00000575312 1977 ntBASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.62■□□□□ 0.89
ATG4BQ9Y4P1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
ATG4BQ9Y4P1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms