Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 SRD5A1P1-201ENST00000442297 786 ntBASIC17.63■□□□□ 0.41
FOXA2Q9Y261 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 AL512631.2-201ENST00000604634 923 ntBASIC17.63■□□□□ 0.41
FOXA2Q9Y261 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
FOXA2Q9Y261 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 QDPR-206ENST00000508623 601 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.62■□□□□ 0.41
FOXA2Q9Y261 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 AC008406.3-201ENST00000620001 1374 ntBASIC17.62■□□□□ 0.41
FOXA2Q9Y261 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 C17orf82-201ENST00000623772 1530 ntBASIC17.62■□□□□ 0.41
FOXA2Q9Y261 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA2Q9Y261 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXA2Q9Y261 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.6■□□□□ 0.41
FOXA2Q9Y261 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA2Q9Y261 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 AL136116.3-201ENST00000402907 1138 ntBASIC17.59■□□□□ 0.41
FOXA2Q9Y261 MIR4466-201ENST00000606121 54 ntBASIC17.59■□□□□ 0.41
FOXA2Q9Y261 AC241377.3-202ENST00000626088 1088 ntBASIC17.59■□□□□ 0.41
FOXA2Q9Y261 AC241585.3-202ENST00000628937 1088 ntBASIC17.59■□□□□ 0.41
FOXA2Q9Y261 AC245100.8-202ENST00000629247 1058 ntBASIC17.59■□□□□ 0.41
FOXA2Q9Y261 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
FOXA2Q9Y261 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.58■□□□□ 0.41
FOXA2Q9Y261 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
FOXA2Q9Y261 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
FOXA2Q9Y261 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA2Q9Y261 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
FOXA2Q9Y261 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC17.58■□□□□ 0.4
FOXA2Q9Y261 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms