Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
DDX41Q9UJV9 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 YBX1P1-201ENST00000445822 960 ntBASIC25.05■■□□□ 1.6
DDX41Q9UJV9 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 AL031602.1-201ENST00000633169 911 ntBASIC25.05■■□□□ 1.6
DDX41Q9UJV9 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
DDX41Q9UJV9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
DDX41Q9UJV9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.03■■□□□ 1.6
DDX41Q9UJV9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC25.03■■□□□ 1.6
DDX41Q9UJV9 AC027612.3-201ENST00000413684 1047 ntBASIC25.03■■□□□ 1.6
DDX41Q9UJV9 AP005435.1-201ENST00000529293 1178 ntBASIC25.03■■□□□ 1.6
DDX41Q9UJV9 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
DDX41Q9UJV9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
DDX41Q9UJV9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
DDX41Q9UJV9 AC079630.1-202ENST00000618127 1840 ntBASIC25.02■■□□□ 1.6
DDX41Q9UJV9 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 AC034268.1-201ENST00000441047 882 ntBASIC25.02■■□□□ 1.6
DDX41Q9UJV9 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC25.02■■□□□ 1.6
DDX41Q9UJV9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 AC012414.1-201ENST00000556676 535 ntBASIC25.01■■□□□ 1.59
DDX41Q9UJV9 MIR6084-201ENST00000622012 110 ntBASIC25.01■■□□□ 1.59
DDX41Q9UJV9 GALC-202ENST00000393568 2054 ntTSL 2 BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DDX41Q9UJV9 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
DDX41Q9UJV9 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25■■□□□ 1.59
DDX41Q9UJV9 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25■■□□□ 1.59
DDX41Q9UJV9 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC25■■□□□ 1.59
DDX41Q9UJV9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC25■■□□□ 1.59
DDX41Q9UJV9 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC25■■□□□ 1.59
DDX41Q9UJV9 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 AL354811.1-201ENST00000610286 706 ntBASIC25■■□□□ 1.59
DDX41Q9UJV9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25■■□□□ 1.59
DDX41Q9UJV9 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
DDX41Q9UJV9 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
DDX41Q9UJV9 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
DDX41Q9UJV9 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.99■■□□□ 1.59
DDX41Q9UJV9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
DDX41Q9UJV9 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
DDX41Q9UJV9 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC24.99■■□□□ 1.59
DDX41Q9UJV9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.99■■□□□ 1.59
DDX41Q9UJV9 AC123595.1-201ENST00000440769 1046 ntBASIC24.99■■□□□ 1.59
DDX41Q9UJV9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.99■■□□□ 1.59
DDX41Q9UJV9 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
DDX41Q9UJV9 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 DUX4L2-201ENST00000561772 1275 ntBASIC24.98■■□□□ 1.59
DDX41Q9UJV9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC24.98■■□□□ 1.59
DDX41Q9UJV9 DUX4L6-201ENST00000626483 1275 ntBASIC24.98■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms