Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
LIME1Q9H400 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
LIME1Q9H400 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
LIME1Q9H400 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIME1Q9H400 AC133637.1-201ENST00000624115 1537 ntBASIC19.16■□□□□ 0.66
LIME1Q9H400 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.16■□□□□ 0.66
LIME1Q9H400 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.16■□□□□ 0.66
LIME1Q9H400 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIME1Q9H400 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIME1Q9H400 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIME1Q9H400 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.16■□□□□ 0.66
LIME1Q9H400 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.16■□□□□ 0.66
LIME1Q9H400 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.16■□□□□ 0.66
LIME1Q9H400 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.16■□□□□ 0.66
LIME1Q9H400 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LIME1Q9H400 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIME1Q9H400 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIME1Q9H400 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIME1Q9H400 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.16■□□□□ 0.66
LIME1Q9H400 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.15■□□□□ 0.66
LIME1Q9H400 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
LIME1Q9H400 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.15■□□□□ 0.66
LIME1Q9H400 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.15■□□□□ 0.66
LIME1Q9H400 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
LIME1Q9H400 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.15■□□□□ 0.66
LIME1Q9H400 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.15■□□□□ 0.66
LIME1Q9H400 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
LIME1Q9H400 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIME1Q9H400 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.14■□□□□ 0.66
LIME1Q9H400 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIME1Q9H400 ANOS2P-203ENST00000472227 1816 ntBASIC19.14■□□□□ 0.65
LIME1Q9H400 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIME1Q9H400 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
LIME1Q9H400 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
LIME1Q9H400 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIME1Q9H400 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.14■□□□□ 0.65
LIME1Q9H400 KRT18P61-201ENST00000585825 1298 ntBASIC19.14■□□□□ 0.65
LIME1Q9H400 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC19.14■□□□□ 0.65
LIME1Q9H400 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.14■□□□□ 0.65
LIME1Q9H400 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIME1Q9H400 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIME1Q9H400 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIME1Q9H400 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIME1Q9H400 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIME1Q9H400 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.14■□□□□ 0.65
LIME1Q9H400 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.14■□□□□ 0.65
LIME1Q9H400 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIME1Q9H400 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
LIME1Q9H400 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIME1Q9H400 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIME1Q9H400 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIME1Q9H400 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.13■□□□□ 0.65
LIME1Q9H400 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIME1Q9H400 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.13■□□□□ 0.65
LIME1Q9H400 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.13■□□□□ 0.65
LIME1Q9H400 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIME1Q9H400 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
LIME1Q9H400 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.13■□□□□ 0.65
LIME1Q9H400 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIME1Q9H400 AL117328.2-201ENST00000624617 1940 ntBASIC19.13■□□□□ 0.65
LIME1Q9H400 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
LIME1Q9H400 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.12■□□□□ 0.65
LIME1Q9H400 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
LIME1Q9H400 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
LIME1Q9H400 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.12■□□□□ 0.65
LIME1Q9H400 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 CLDN5-201ENST00000403084 2357 ntBASIC19.12■□□□□ 0.65
LIME1Q9H400 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LIME1Q9H400 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.11■□□□□ 0.65
LIME1Q9H400 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 ALDH1A3-203ENST00000557963 1670 ntBASIC19.11■□□□□ 0.65
LIME1Q9H400 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC19.11■□□□□ 0.65
LIME1Q9H400 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
LIME1Q9H400 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
LIME1Q9H400 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.11■□□□□ 0.65
LIME1Q9H400 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LIME1Q9H400 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
LIME1Q9H400 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.11■□□□□ 0.65
LIME1Q9H400 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.11■□□□□ 0.65
LIME1Q9H400 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
LIME1Q9H400 CDCA4P2-201ENST00000441182 718 ntBASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms