Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 AC087239.1-201ENST00000622671 572 ntBASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTCHD1Q96NR3 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PTCHD1Q96NR3 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 LINC01960-201ENST00000563759 1884 ntBASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.54■□□□□ 0.88
PTCHD1Q96NR3 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.53■□□□□ 0.88
PTCHD1Q96NR3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.52■□□□□ 0.88
PTCHD1Q96NR3 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.52■□□□□ 0.88
PTCHD1Q96NR3 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD1Q96NR3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.52■□□□□ 0.88
PTCHD1Q96NR3 AC010141.3-201ENST00000456659 717 ntBASIC20.52■□□□□ 0.88
PTCHD1Q96NR3 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.52■□□□□ 0.88
PTCHD1Q96NR3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTCHD1Q96NR3 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
PTCHD1Q96NR3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTCHD1Q96NR3 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 MIR572-201ENST00000384983 95 ntBASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 C1orf229-201ENST00000623686 2258 ntBASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTCHD1Q96NR3 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
PTCHD1Q96NR3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms