Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AL136162.1-201ENST00000607711 1078 ntBASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 EP400NL-214ENST00000641289 2402 ntBASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 AC092053.2-201ENST00000640557 1818 ntBASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 PBX2P1-201ENST00000493219 1291 ntBASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 AP001330.3-201ENST00000520123 633 ntBASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
SHROOM3Q8TF72 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 RBM38-205ENST00000440234 686 ntTSL 2 BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SHROOM3Q8TF72 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
SHROOM3Q8TF72 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
SHROOM3Q8TF72 AC242852.2-201ENST00000615738 1807 ntBASIC22.33■■□□□ 1.16
SHROOM3Q8TF72 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 AC090192.1-201ENST00000517740 490 ntBASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 AL031432.3-201ENST00000607698 485 ntBASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
SHROOM3Q8TF72 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 STX4-202ENST00000394998 1498 ntTSL 2 BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
SHROOM3Q8TF72 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
SHROOM3Q8TF72 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 AF213884.3-201ENST00000563833 479 ntBASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
SHROOM3Q8TF72 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 AC099791.1-201ENST00000416440 715 ntBASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 BX842568.3-201ENST00000418104 571 ntBASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 MAG-206ENST00000597035 542 ntTSL 4 BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SHROOM3Q8TF72 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms