Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 AC016769.1-201ENST00000409132 1010 ntBASIC21.37■■□□□ 1.01
LMX1AQ8TE12 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 AC137761.2-201ENST00000561729 223 ntBASIC21.37■■□□□ 1.01
LMX1AQ8TE12 AC145350.3-201ENST00000569033 163 ntBASIC21.37■■□□□ 1.01
LMX1AQ8TE12 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.37■■□□□ 1.01
LMX1AQ8TE12 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 ANOS2P-203ENST00000472227 1816 ntBASIC21.36■■□□□ 1.01
LMX1AQ8TE12 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.36■■□□□ 1.01
LMX1AQ8TE12 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 AC004854.2-201ENST00000608450 1441 ntBASIC21.35■■□□□ 1.01
LMX1AQ8TE12 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LMX1AQ8TE12 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LMX1AQ8TE12 AP004607.4-201ENST00000530158 1459 ntBASIC21.34■■□□□ 1.01
LMX1AQ8TE12 DUSP8P3-201ENST00000399571 1760 ntBASIC21.34■■□□□ 1.01
LMX1AQ8TE12 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
LMX1AQ8TE12 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LMX1AQ8TE12 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LMX1AQ8TE12 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LMX1AQ8TE12 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
LMX1AQ8TE12 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.34■■□□□ 1.01
LMX1AQ8TE12 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
LMX1AQ8TE12 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LMX1AQ8TE12 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1
LMX1AQ8TE12 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC21.33■■□□□ 1
LMX1AQ8TE12 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LMX1AQ8TE12 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.32■■□□□ 1
LMX1AQ8TE12 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.32■■□□□ 1
LMX1AQ8TE12 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
LMX1AQ8TE12 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.32■■□□□ 1
LMX1AQ8TE12 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LMX1AQ8TE12 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
LMX1AQ8TE12 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.32■■□□□ 1
LMX1AQ8TE12 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LMX1AQ8TE12 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
LMX1AQ8TE12 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LMX1AQ8TE12 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LMX1AQ8TE12 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LMX1AQ8TE12 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LMX1AQ8TE12 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.31■■□□□ 1
LMX1AQ8TE12 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.31■■□□□ 1
LMX1AQ8TE12 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.31■■□□□ 1
LMX1AQ8TE12 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.31■■□□□ 1
LMX1AQ8TE12 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.31■■□□□ 1
LMX1AQ8TE12 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.31■■□□□ 1
LMX1AQ8TE12 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
LMX1AQ8TE12 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.31■■□□□ 1
LMX1AQ8TE12 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.3■■□□□ 1
LMX1AQ8TE12 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.3■■□□□ 1
LMX1AQ8TE12 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.3■■□□□ 1
LMX1AQ8TE12 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LMX1AQ8TE12 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.3■■□□□ 1
LMX1AQ8TE12 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
LMX1AQ8TE12 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.3■■□□□ 1
LMX1AQ8TE12 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.3■■□□□ 1
LMX1AQ8TE12 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.3■■□□□ 1
LMX1AQ8TE12 AC006015.1-201ENST00000429970 570 ntBASIC21.3■■□□□ 1
LMX1AQ8TE12 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.3■■□□□ 1
LMX1AQ8TE12 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.3■■□□□ 1
LMX1AQ8TE12 AC080038.1-201ENST00000611274 1154 ntBASIC21.3■■□□□ 1
LMX1AQ8TE12 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.3■■□□□ 1
LMX1AQ8TE12 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LMX1AQ8TE12 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.3■■□□□ 1
LMX1AQ8TE12 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LMX1AQ8TE12 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.29■■□□□ 1
LMX1AQ8TE12 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.29■■□□□ 1
LMX1AQ8TE12 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
LMX1AQ8TE12 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
LMX1AQ8TE12 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.29■■□□□ 1
LMX1AQ8TE12 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.29■■□□□ 1
LMX1AQ8TE12 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 214.9 ms