Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC20.27■□□□□ 0.831e-7■■■□□ 17.8
DDX55Q8NHQ9 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.31e-6■■■□□ 17.8
DDX55Q8NHQ9 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC22.22■■□□□ 1.159e-11■■■□□ 17.8
DDX55Q8NHQ9 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.74■□□□□ 0.919e-11■■■□□ 17.8
DDX55Q8NHQ9 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.739e-11■■■□□ 17.8
DDX55Q8NHQ9 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.619e-11■■■□□ 17.8
DDX55Q8NHQ9 TRMT112-205ENST00000539854 659 ntTSL 2 BASIC12.5□□□□□ -0.419e-11■■■□□ 17.8
DDX55Q8NHQ9 THAP7-203ENST00000466670 1080 ntTSL 523.33■■□□□ 1.332e-6■■■□□ 17.8
DDX55Q8NHQ9 AP2A1-208ENST00000601356 2238 nt24.89■■□□□ 1.572e-16■■■□□ 17.7
DDX55Q8NHQ9 AP2A1-201ENST00000354293 3388 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.412e-16■■■□□ 17.7
DDX55Q8NHQ9 AP2A1-202ENST00000359032 3286 ntAPPRIS P4 TSL 5 BASIC12.19□□□□□ -0.462e-16■■■□□ 17.7
DDX55Q8NHQ9 EFNA1-203ENST00000469878 1288 ntTSL 316.82■□□□□ 0.282e-21■■■□□ 17.7
DDX55Q8NHQ9 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC22.47■■□□□ 1.194e-7■■■□□ 17.7
DDX55Q8NHQ9 ZFAND2A-202ENST00000397083 852 ntTSL 1 (best)22.47■■□□□ 1.194e-7■■■□□ 17.7
DDX55Q8NHQ9 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.194e-7■■■□□ 17.7
DDX55Q8NHQ9 ZFAND2A-206ENST00000484977 1084 ntTSL 221■□□□□ 0.954e-7■■■□□ 17.7
DDX55Q8NHQ9 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.511e-6■■■□□ 17.7
DDX55Q8NHQ9 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.11e-17■■■□□ 17.7
DDX55Q8NHQ9 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.25e-8■■■□□ 17.7
DDX55Q8NHQ9 GGH-203ENST00000518466 696 ntTSL 37.87□□□□□ -1.155e-8■■■□□ 17.7
DDX55Q8NHQ9 SDC2-207ENST00000522911 677 ntTSL 3 BASIC11.83□□□□□ -0.524e-7■■■□□ 17.7
DDX55Q8NHQ9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.162e-6■■■□□ 17.7
DDX55Q8NHQ9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.942e-6■■■□□ 17.7
DDX55Q8NHQ9 TMEM109-203ENST00000540280 724 ntTSL 314.07□□□□□ -0.162e-6■■■□□ 17.7
DDX55Q8NHQ9 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.187e-8■■■□□ 17.7
DDX55Q8NHQ9 ITFG1-211ENST00000568047 2636 ntTSL 57.75□□□□□ -1.177e-8■■■□□ 17.7
DDX55Q8NHQ9 ITFG1-202ENST00000537184 1422 ntTSL 26.24□□□□□ -1.417e-8■■■□□ 17.7
DDX55Q8NHQ9 LAMTOR5-207ENST00000602858 553 ntTSL 2 BASIC7.16□□□□□ -1.262e-6■■■□□ 17.6
DDX55Q8NHQ9 APOC1-208ENST00000592535 430 ntTSL 1 (best)17.1■□□□□ 0.334e-15■■■□□ 17.6
DDX55Q8NHQ9 APOC1-209ENST00000592885 562 ntTSL 3 BASIC16.52■□□□□ 0.244e-15■■■□□ 17.6
DDX55Q8NHQ9 APOC1-206ENST00000590334 508 ntTSL 514.32□□□□□ -0.124e-15■■■□□ 17.6
DDX55Q8NHQ9 APOC1-203ENST00000588802 553 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.424e-15■■■□□ 17.6
DDX55Q8NHQ9 APOC1-205ENST00000589781 273 ntTSL 3 BASIC11.93□□□□□ -0.54e-15■■■□□ 17.6
DDX55Q8NHQ9 APOC1-207ENST00000592176 514 ntTSL 511.59□□□□□ -0.554e-15■■■□□ 17.6
DDX55Q8NHQ9 APOC1-201ENST00000586638 425 ntTSL 3 BASIC11.59□□□□□ -0.554e-15■■■□□ 17.6
DDX55Q8NHQ9 APOC1-202ENST00000588750 689 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.844e-15■■■□□ 17.6
DDX55Q8NHQ9 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.392e-7■■■□□ 17.6
DDX55Q8NHQ9 BRD2-209ENST00000469132 1628 ntTSL 221.93■■□□□ 1.11e-12■■■□□ 17.6
DDX55Q8NHQ9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC29.74■■■□□ 2.351e-9■■■□□ 17.6
DDX55Q8NHQ9 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.31e-9■■■□□ 17.6
DDX55Q8NHQ9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC26.4■■□□□ 1.821e-9■■■□□ 17.6
DDX55Q8NHQ9 ARHGAP4-210ENST00000442172 880 ntTSL 326.28■■□□□ 1.81e-9■■■□□ 17.6
DDX55Q8NHQ9 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC22.87■■□□□ 1.253e-19■■■□□ 17.6
DDX55Q8NHQ9 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91e-9■■■□□ 17.6
DDX55Q8NHQ9 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.491e-9■■■□□ 17.6
DDX55Q8NHQ9 SEC61G-205ENST00000460484 1227 ntTSL 1 (best)11.17□□□□□ -0.625e-10■■■□□ 17.6
DDX55Q8NHQ9 SEC61G-207ENST00000480303 661 ntTSL 1 (best)10.67□□□□□ -0.75e-10■■■□□ 17.6
DDX55Q8NHQ9 SEC61G-206ENST00000461536 437 ntTSL 24.98□□□□□ -1.615e-10■■■□□ 17.6
DDX55Q8NHQ9 C20orf27-203ENST00000399672 1734 ntAPPRIS P1 TSL 228.91■■■□□ 2.224e-8■■■□□ 17.6
DDX55Q8NHQ9 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.944e-8■■■□□ 17.6
DDX55Q8NHQ9 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC25.34■■□□□ 1.657e-8■■■□□ 17.6
DDX55Q8NHQ9 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC24.12■■□□□ 1.454e-8■■■□□ 17.6
DDX55Q8NHQ9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.357e-8■■■□□ 17.6
DDX55Q8NHQ9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC22.78■■□□□ 1.247e-8■■■□□ 17.6
DDX55Q8NHQ9 NDUFB10-203ENST00000565031 958 ntTSL 220.17■□□□□ 0.827e-8■■■□□ 17.6
DDX55Q8NHQ9 C20orf27-204ENST00000399683 933 ntTSL 219.57■□□□□ 0.724e-8■■■□□ 17.6
DDX55Q8NHQ9 NDUFB10-205ENST00000570172 495 ntTSL 313.74□□□□□ -0.217e-8■■■□□ 17.6
DDX55Q8NHQ9 TSN-211ENST00000498545 1118 ntTSL 1 (best)20.07■□□□□ 0.83e-7■■■□□ 17.5
DDX55Q8NHQ9 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.579e-23■■■□□ 17.5
DDX55Q8NHQ9 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.299e-23■■■□□ 17.5
DDX55Q8NHQ9 TSN-208ENST00000490104 2717 ntTSL 216.03■□□□□ 0.163e-7■■■□□ 17.5
DDX55Q8NHQ9 TSN-204ENST00000467324 2843 ntTSL 514.89□□□□□ -0.033e-7■■■□□ 17.5
DDX55Q8NHQ9 TSN-202ENST00000409193 1436 ntTSL 5 BASIC14.41□□□□□ -0.13e-7■■■□□ 17.5
DDX55Q8NHQ9 TSN-212ENST00000536142 3328 ntTSL 2 BASIC14.36□□□□□ -0.113e-7■■■□□ 17.5
DDX55Q8NHQ9 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.253e-7■■■□□ 17.5
DDX55Q8NHQ9 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.96■□□□□ 0.474e-8■■■□□ 17.5
DDX55Q8NHQ9 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC14.1□□□□□ -0.154e-8■■■□□ 17.5
DDX55Q8NHQ9 WDR6-221ENST00000610967 4259 ntTSL 1 (best) BASIC13.13□□□□□ -0.314e-8■■■□□ 17.5
DDX55Q8NHQ9 WDR6-220ENST00000608424 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.464e-8■■■□□ 17.5
DDX55Q8NHQ9 WDR6-208ENST00000452875 3916 ntTSL 1 (best)11.92□□□□□ -0.54e-8■■■□□ 17.5
DDX55Q8NHQ9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.863e-7■■■□□ 17.5
DDX55Q8NHQ9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.613e-7■■■□□ 17.5
DDX55Q8NHQ9 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC23.7■■□□□ 1.383e-7■■■□□ 17.5
DDX55Q8NHQ9 RHOC-212ENST00000468093 1042 ntTSL 318.24■□□□□ 0.513e-7■■■□□ 17.5
DDX55Q8NHQ9 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.453e-7■■■□□ 17.5
DDX55Q8NHQ9 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.157e-11■■■□□ 17.5
DDX55Q8NHQ9 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC13.69□□□□□ -0.227e-11■■■□□ 17.5
DDX55Q8NHQ9 GPX1-203ENST00000496791 580 ntTSL 326.66■■□□□ 1.862e-25■■■□□ 17.5
DDX55Q8NHQ9 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.445e-7■■■□□ 17.5
DDX55Q8NHQ9 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC6.46□□□□□ -1.385e-7■■■□□ 17.5
DDX55Q8NHQ9 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.189e-7■■■□□ 17.5
DDX55Q8NHQ9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.474e-15■■■□□ 17.4
DDX55Q8NHQ9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC28.11■■■□□ 2.092e-8■■■□□ 17.4
DDX55Q8NHQ9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.362e-8■■■□□ 17.4
DDX55Q8NHQ9 LSM4-206ENST00000600289 1113 ntTSL 219.68■□□□□ 0.742e-8■■■□□ 17.4
DDX55Q8NHQ9 RPL41-205ENST00000546654 238 ntTSL 27.42□□□□□ -1.224e-59■■■□□ 17.4
DDX55Q8NHQ9 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.286e-16■■■□□ 17.4
DDX55Q8NHQ9 ZFAND5-208ENST00000488164 3020 ntTSL 516.79■□□□□ 0.286e-16■■■□□ 17.4
DDX55Q8NHQ9 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.196e-16■■■□□ 17.4
DDX55Q8NHQ9 ZFAND5-201ENST00000237937 5310 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.436e-16■■■□□ 17.4
DDX55Q8NHQ9 NUMA1-217ENST00000540626 2276 ntTSL 215.7■□□□□ 0.12e-7■■■□□ 17.4
DDX55Q8NHQ9 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.22■□□□□ 0.996e-7■■■□□ 17.4
DDX55Q8NHQ9 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.386e-7■■■□□ 17.4
DDX55Q8NHQ9 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.359e-7■■■□□ 17.4
DDX55Q8NHQ9 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC21.41■■□□□ 1.029e-7■■■□□ 17.4
DDX55Q8NHQ9 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.62■□□□□ 0.419e-7■■■□□ 17.4
DDX55Q8NHQ9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC29.21■■■□□ 2.274e-8■■■□□ 17.4
DDX55Q8NHQ9 HAGHL-206ENST00000561561 434 ntTSL 221.17■□□□□ 0.984e-8■■■□□ 17.4
DDX55Q8NHQ9 HAGHL-218ENST00000569385 440 ntTSL 219.98■□□□□ 0.794e-8■■■□□ 17.4
DDX55Q8NHQ9 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.246e-38■■■□□ 17.4
Retrieved 100 of 15,504 protein–RNA pairs in 149.4 ms