Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 NT5C3AP1-201ENST00000394500 1012 ntBASIC6.67□□□□□ -1.34
SYNE1Q8NF91 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 VPS53-216ENST00000574029 585 ntTSL 4 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 COX20-201ENST00000366528 568 ntTSL 2 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 AC241377.3-202ENST00000626088 1088 ntBASIC6.67□□□□□ -1.34
SYNE1Q8NF91 AC241585.3-202ENST00000628937 1088 ntBASIC6.67□□□□□ -1.34
SYNE1Q8NF91 AC245100.8-202ENST00000629247 1058 ntBASIC6.67□□□□□ -1.34
SYNE1Q8NF91 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SYNE1Q8NF91 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 AP005435.1-201ENST00000529293 1178 ntBASIC6.66□□□□□ -1.34
SYNE1Q8NF91 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 WWOX-218ENST00000627394 894 ntTSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 TERT-206ENST00000508104 2486 ntTSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 GAS2L1P2-201ENST00000436355 1356 ntBASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 AC092171.4-201ENST00000609130 632 ntBASIC6.66□□□□□ -1.34
SYNE1Q8NF91 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 NME4-202ENST00000382940 766 ntTSL 3 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 NME4-211ENST00000620944 1193 ntTSL 2 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC6.66□□□□□ -1.34
SYNE1Q8NF91 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 AC026185.1-201ENST00000445748 174 ntBASIC6.65□□□□□ -1.34
SYNE1Q8NF91 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
SYNE1Q8NF91 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms