Protein–RNA interactions for Protein: Q6STE5

SMARCD3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3Q6STE5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 MIR4787-201ENST00000607364 84 ntBASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SMARCD3Q6STE5 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.84■□□□□ 0.77
SMARCD3Q6STE5 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.83■□□□□ 0.77
SMARCD3Q6STE5 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.83■□□□□ 0.77
SMARCD3Q6STE5 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMARCD3Q6STE5 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMARCD3Q6STE5 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMARCD3Q6STE5 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMARCD3Q6STE5 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.83■□□□□ 0.77
SMARCD3Q6STE5 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCD3Q6STE5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCD3Q6STE5 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCD3Q6STE5 AC004687.1-201ENST00000579003 1625 ntBASIC19.83■□□□□ 0.76
SMARCD3Q6STE5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
SMARCD3Q6STE5 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCD3Q6STE5 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 AC010997.5-201ENST00000609182 354 ntBASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCD3Q6STE5 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 AL137060.1-201ENST00000618151 2648 ntBASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 AL024507.2-201ENST00000606070 2574 ntBASIC19.81■□□□□ 0.76
SMARCD3Q6STE5 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 AC239859.2-201ENST00000444165 318 ntBASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 C17orf82-201ENST00000623772 1530 ntBASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCD3Q6STE5 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCD3Q6STE5 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SMARCD3Q6STE5 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.78■□□□□ 0.76
SMARCD3Q6STE5 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SMARCD3Q6STE5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SMARCD3Q6STE5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms