Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LRIF1Q5T3J3 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRIF1Q5T3J3 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRIF1Q5T3J3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRIF1Q5T3J3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LRIF1Q5T3J3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.6■□□□□ 0.89
LRIF1Q5T3J3 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LRIF1Q5T3J3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 HES6-204ENST00000409182 863 ntTSL 2 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 KRT125P-201ENST00000546827 989 ntBASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 AL499627.2-201ENST00000606283 725 ntBASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
LRIF1Q5T3J3 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
LRIF1Q5T3J3 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRIF1Q5T3J3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LRIF1Q5T3J3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LRIF1Q5T3J3 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.58■□□□□ 0.88
LRIF1Q5T3J3 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 AC244015.2-201ENST00000616358 1861 ntBASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
LRIF1Q5T3J3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 MIR4787-201ENST00000607364 84 ntBASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
LRIF1Q5T3J3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
LRIF1Q5T3J3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRIF1Q5T3J3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
LRIF1Q5T3J3 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRIF1Q5T3J3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRIF1Q5T3J3 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRIF1Q5T3J3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.55■□□□□ 0.88
LRIF1Q5T3J3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LRIF1Q5T3J3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 AC010997.5-201ENST00000609182 354 ntBASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LRIF1Q5T3J3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRIF1Q5T3J3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
LRIF1Q5T3J3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRIF1Q5T3J3 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LRIF1Q5T3J3 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
LRIF1Q5T3J3 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms