Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.98■■□□□ 1.43
CCDC40Q4G0X9 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.98■■□□□ 1.43
CCDC40Q4G0X9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC40Q4G0X9 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC23.98■■□□□ 1.43
CCDC40Q4G0X9 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.98■■□□□ 1.43
CCDC40Q4G0X9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC23.98■■□□□ 1.43
CCDC40Q4G0X9 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC23.98■■□□□ 1.43
CCDC40Q4G0X9 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.98■■□□□ 1.43
CCDC40Q4G0X9 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC40Q4G0X9 SRD5A1P1-201ENST00000442297 786 ntBASIC23.97■■□□□ 1.43
CCDC40Q4G0X9 QDPR-206ENST00000508623 601 ntTSL 3 BASIC23.97■■□□□ 1.43
CCDC40Q4G0X9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.97■■□□□ 1.43
CCDC40Q4G0X9 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC40Q4G0X9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC23.97■■□□□ 1.43
CCDC40Q4G0X9 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 AC133637.1-201ENST00000624115 1537 ntBASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
CCDC40Q4G0X9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
CCDC40Q4G0X9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.43
CCDC40Q4G0X9 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.43
CCDC40Q4G0X9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 AL512631.2-201ENST00000604634 923 ntBASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CCDC40Q4G0X9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 AC137767.1-201ENST00000602918 1920 ntBASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
CCDC40Q4G0X9 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
CCDC40Q4G0X9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 C11orf96-202ENST00000528572 1834 ntBASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
CCDC40Q4G0X9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 CA15P2-201ENST00000611168 834 ntBASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
CCDC40Q4G0X9 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC23.91■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 646.4 ms