Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
LRRK1Q38SD2 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.07
LRRK1Q38SD2 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 IKBKGP1-201ENST00000612193 1073 ntBASIC21.7■■□□□ 1.06
LRRK1Q38SD2 AC105233.4-201ENST00000642045 216 ntBASIC21.7■■□□□ 1.06
LRRK1Q38SD2 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 C9orf163-202ENST00000624034 2573 ntBASIC21.7■■□□□ 1.06
LRRK1Q38SD2 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
LRRK1Q38SD2 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
LRRK1Q38SD2 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
LRRK1Q38SD2 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 AC087742.1-201ENST00000575880 1738 ntBASIC21.67■■□□□ 1.06
LRRK1Q38SD2 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
LRRK1Q38SD2 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.66■■□□□ 1.06
LRRK1Q38SD2 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LRRK1Q38SD2 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.65■■□□□ 1.06
LRRK1Q38SD2 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.64■■□□□ 1.05
LRRK1Q38SD2 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
LRRK1Q38SD2 BX005040.4-201ENST00000637145 1518 ntBASIC21.64■■□□□ 1.05
LRRK1Q38SD2 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms