Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.21■□□□□ 0.83
RNF4P78317 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.21■□□□□ 0.83
RNF4P78317 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF4P78317 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNF4P78317 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF4P78317 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF4P78317 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNF4P78317 OXCT2P1-201ENST00000447263 1535 ntBASIC20.21■□□□□ 0.83
RNF4P78317 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.21■□□□□ 0.83
RNF4P78317 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
RNF4P78317 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.2■□□□□ 0.82
RNF4P78317 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RNF4P78317 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF4P78317 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RNF4P78317 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF4P78317 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.2■□□□□ 0.82
RNF4P78317 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
RNF4P78317 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF4P78317 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.2■□□□□ 0.82
RNF4P78317 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF4P78317 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF4P78317 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
RNF4P78317 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNF4P78317 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.2■□□□□ 0.82
RNF4P78317 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.2■□□□□ 0.82
RNF4P78317 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF4P78317 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.19■□□□□ 0.82
RNF4P78317 AL358852.1-201ENST00000623174 1268 ntBASIC20.19■□□□□ 0.82
RNF4P78317 AC105233.4-201ENST00000642045 216 ntBASIC20.19■□□□□ 0.82
RNF4P78317 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF4P78317 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF4P78317 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF4P78317 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF4P78317 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF4P78317 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.18■□□□□ 0.82
RNF4P78317 AC012414.1-201ENST00000556676 535 ntBASIC20.18■□□□□ 0.82
RNF4P78317 AL354811.1-201ENST00000610286 706 ntBASIC20.18■□□□□ 0.82
RNF4P78317 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RNF4P78317 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF4P78317 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF4P78317 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF4P78317 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF4P78317 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF4P78317 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF4P78317 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
RNF4P78317 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF4P78317 AC087742.1-201ENST00000575880 1738 ntBASIC20.17■□□□□ 0.82
RNF4P78317 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF4P78317 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.17■□□□□ 0.82
RNF4P78317 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
RNF4P78317 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF4P78317 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF4P78317 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
RNF4P78317 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF4P78317 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RNF4P78317 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RNF4P78317 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF4P78317 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF4P78317 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF4P78317 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF4P78317 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
RNF4P78317 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF4P78317 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.15■□□□□ 0.82
RNF4P78317 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.15■□□□□ 0.82
RNF4P78317 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.15■□□□□ 0.82
RNF4P78317 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.15■□□□□ 0.82
RNF4P78317 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.15■□□□□ 0.82
RNF4P78317 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RNF4P78317 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
RNF4P78317 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RNF4P78317 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNF4P78317 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
RNF4P78317 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms