Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CKS1BP61024 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC15.15■□□□□ 0.02
CKS1BP61024 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CKS1BP61024 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC15.14■□□□□ 0.01
CKS1BP61024 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC15.14■□□□□ 0.01
CKS1BP61024 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CKS1BP61024 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CKS1BP61024 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
CKS1BP61024 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
CKS1BP61024 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CKS1BP61024 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC15.13■□□□□ 0.01
CKS1BP61024 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CKS1BP61024 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CKS1BP61024 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC15.13■□□□□ 0.01
CKS1BP61024 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC15.13■□□□□ 0.01
CKS1BP61024 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.13■□□□□ 0.01
CKS1BP61024 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC15.13■□□□□ 0.01
CKS1BP61024 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC15.13■□□□□ 0.01
CKS1BP61024 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.13■□□□□ 0.01
CKS1BP61024 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC15.13■□□□□ 0.01
CKS1BP61024 LETM1P2-201ENST00000597330 2178 ntBASIC15.13■□□□□ 0.01
CKS1BP61024 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC15.13■□□□□ 0.01
CKS1BP61024 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC15.13■□□□□ 0.01
CKS1BP61024 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC15.13■□□□□ 0.01
CKS1BP61024 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
CKS1BP61024 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CKS1BP61024 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CKS1BP61024 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 EI24-213ENST00000618552 1747 ntTSL 5 BASIC15.12■□□□□ 0.01
CKS1BP61024 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CKS1BP61024 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC15.12■□□□□ 0.01
CKS1BP61024 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CKS1BP61024 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CKS1BP61024 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC15.12■□□□□ 0.01
CKS1BP61024 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CKS1BP61024 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CKS1BP61024 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
CKS1BP61024 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC15.12■□□□□ 0.01
CKS1BP61024 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CKS1BP61024 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CKS1BP61024 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC15.11■□□□□ 0.01
CKS1BP61024 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CKS1BP61024 MIR6765-201ENST00000614092 87 ntBASIC15.11■□□□□ 0.01
CKS1BP61024 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC15.11■□□□□ 0.01
CKS1BP61024 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 HCG11-201ENST00000411553 5696 ntBASIC15.11■□□□□ 0.01
CKS1BP61024 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CKS1BP61024 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CKS1BP61024 PODN-203ENST00000395871 2744 ntTSL 5 BASIC15.1■□□□□ 0.01
CKS1BP61024 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CKS1BP61024 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CKS1BP61024 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CKS1BP61024 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC15.1■□□□□ 0.01
CKS1BP61024 STK32C-205ENST00000456004 607 ntTSL 2 BASIC15.1■□□□□ 0.01
CKS1BP61024 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms